diff --git a/cdbpr-env.yml b/cdbpr-env.yml new file mode 100644 index 0000000000000000000000000000000000000000..9479da223ffdad33be9bedb0814aef0d3aa90639 --- /dev/null +++ b/cdbpr-env.yml @@ -0,0 +1,202 @@ +name: cdbpr-env +channels: + - anaconda + - pytorch + - defaults +dependencies: + - _libgcc_mutex=0.1=main + - _openmp_mutex=5.1=1_gnu + - anyio=4.2.0=py311h06a4308_0 + - argon2-cffi=21.3.0=pyhd3eb1b0_0 + - argon2-cffi-bindings=21.2.0=py311h5eee18b_0 + - asttokens=2.0.5=pyhd3eb1b0_0 + - async-lru=2.0.4=py311h06a4308_0 + - attrs=23.1.0=py311h06a4308_0 + - babel=2.11.0=py311h06a4308_0 + - beautifulsoup4=4.12.2=py311h06a4308_0 + - blas=1.0=mkl + - bleach=4.1.0=pyhd3eb1b0_0 + - bottleneck=1.3.5=py311hbed6279_0 + - bzip2=1.0.8=h7b6447c_0 + - ca-certificates=2023.12.12=h06a4308_0 + - certifi=2024.2.2=py311h06a4308_0 + - cffi=1.16.0=py311h5eee18b_0 + - charset-normalizer=2.0.4=pyhd3eb1b0_0 + - comm=0.1.2=py311h06a4308_0 + - cpuonly=2.0=0 + - cyrus-sasl=2.1.28=h52b45da_1 + - dbus=1.13.18=hb2f20db_0 + - debugpy=1.6.7=py311h6a678d5_0 + - decorator=5.1.1=pyhd3eb1b0_0 + - defusedxml=0.7.1=pyhd3eb1b0_0 + - executing=0.8.3=pyhd3eb1b0_0 + - expat=2.5.0=h6a678d5_0 + - ffmpeg=4.3=hf484d3e_0 + - filelock=3.13.1=py311h06a4308_0 + - fontconfig=2.14.1=h4c34cd2_2 + - freetype=2.12.1=h4a9f257_0 + - glib=2.69.1=he621ea3_2 + - gmp=6.2.1=h295c915_3 + - gmpy2=2.1.2=py311hc9b5ff0_0 + - gnutls=3.6.15=he1e5248_0 + - gst-plugins-base=1.14.1=h6a678d5_1 + - gstreamer=1.14.1=h5eee18b_1 + - icu=73.1=h6a678d5_0 + - idna=3.4=py311h06a4308_0 + - intel-openmp=2023.1.0=hdb19cb5_46306 + - ipykernel=6.28.0=py311h06a4308_0 + - ipython=8.20.0=py311h06a4308_0 + - ipywidgets=8.0.4=py311h06a4308_0 + - jedi=0.18.1=py311h06a4308_1 + - jinja2=3.1.3=py311h06a4308_0 + - joblib=1.2.0=py311h06a4308_0 + - jpeg=9e=h5eee18b_1 + - json5=0.9.6=pyhd3eb1b0_0 + - jsonschema=4.19.2=py311h06a4308_0 + - jsonschema-specifications=2023.7.1=py311h06a4308_0 + - jupyter=1.0.0=py311h06a4308_8 + - jupyter-lsp=2.2.0=py311h06a4308_0 + - jupyter_client=8.6.0=py311h06a4308_0 + - jupyter_console=6.6.3=py311h06a4308_0 + - jupyter_core=5.5.0=py311h06a4308_0 + - jupyter_events=0.8.0=py311h06a4308_0 + - jupyter_server=2.10.0=py311h06a4308_0 + - jupyter_server_terminals=0.4.4=py311h06a4308_1 + - jupyterlab=4.0.11=py311h06a4308_0 + - jupyterlab_pygments=0.1.2=py_0 + - jupyterlab_server=2.25.1=py311h06a4308_0 + - jupyterlab_widgets=3.0.9=py311h06a4308_0 + - krb5=1.20.1=h143b758_1 + - lame=3.100=h7b6447c_0 + - lcms2=2.12=h3be6417_0 + - ld_impl_linux-64=2.38=h1181459_1 + - lerc=3.0=h295c915_0 + - libclang=14.0.6=default_hc6dbbc7_1 + - libclang13=14.0.6=default_he11475f_1 + - libcups=2.4.2=h2d74bed_1 + - libdeflate=1.17=h5eee18b_1 + - libedit=3.1.20230828=h5eee18b_0 + - libffi=3.4.4=h6a678d5_0 + - libgcc-ng=11.2.0=h1234567_1 + - libgfortran-ng=11.2.0=h00389a5_1 + - libgfortran5=11.2.0=h1234567_1 + - libgomp=11.2.0=h1234567_1 + - libiconv=1.16=h7f8727e_2 + - libidn2=2.3.4=h5eee18b_0 + - libjpeg-turbo=2.0.0=h9bf148f_0 + - libllvm14=14.0.6=hdb19cb5_3 + - libpng=1.6.39=h5eee18b_0 + - libpq=12.17=hdbd6064_0 + - libsodium=1.0.18=h7b6447c_0 + - libstdcxx-ng=11.2.0=h1234567_1 + - libtasn1=4.19.0=h5eee18b_0 + - libtiff=4.5.1=h6a678d5_0 + - libunistring=0.9.10=h27cfd23_0 + - libuuid=1.41.5=h5eee18b_0 + - libwebp-base=1.3.2=h5eee18b_0 + - libxcb=1.15=h7f8727e_0 + - libxkbcommon=1.0.1=h5eee18b_1 + - libxml2=2.10.4=hf1b16e4_1 + - llvm-openmp=14.0.6=h9e868ea_0 + - lz4-c=1.9.4=h6a678d5_0 + - markupsafe=2.1.3=py311h5eee18b_0 + - matplotlib-inline=0.1.6=py311h06a4308_0 + - mistune=2.0.4=py311h06a4308_0 + - mkl=2023.1.0=h213fc3f_46344 + - mkl-service=2.4.0=py311h5eee18b_1 + - mkl_fft=1.3.8=py311h5eee18b_0 + - mkl_random=1.2.4=py311hdb19cb5_0 + - mpc=1.1.0=h10f8cd9_1 + - mpfr=4.0.2=hb69a4c5_1 + - mpmath=1.3.0=py311h06a4308_0 + - mysql=5.7.24=h721c034_2 + - nbclient=0.8.0=py311h06a4308_0 + - nbconvert=7.10.0=py311h06a4308_0 + - nbformat=5.9.2=py311h06a4308_0 + - ncurses=6.4=h6a678d5_0 + - nest-asyncio=1.5.6=py311h06a4308_0 + - nettle=3.7.3=hbbd107a_1 + - networkx=3.1=py311h06a4308_0 + - notebook=7.0.6=py311h06a4308_0 + - notebook-shim=0.2.3=py311h06a4308_0 + - numexpr=2.8.7=py311h65dcdc2_0 + - numpy=1.26.3=py311h08b1b3b_0 + - numpy-base=1.26.3=py311hf175353_0 + - openh264=2.1.1=h4ff587b_0 + - openjpeg=2.4.0=h3ad879b_0 + - openssl=3.0.13=h7f8727e_0 + - overrides=7.4.0=py311h06a4308_0 + - packaging=23.1=py311h06a4308_0 + - pandas=2.1.4=py311ha02d727_0 + - pandocfilters=1.5.0=pyhd3eb1b0_0 + - parso=0.8.3=pyhd3eb1b0_0 + - pcre=8.45=h295c915_0 + - pexpect=4.8.0=pyhd3eb1b0_3 + - pillow=10.2.0=py311h5eee18b_0 + - pip=23.3.1=py311h06a4308_0 + - platformdirs=3.10.0=py311h06a4308_0 + - ply=3.11=py311h06a4308_0 + - prometheus_client=0.14.1=py311h06a4308_0 + - prompt-toolkit=3.0.43=py311h06a4308_0 + - prompt_toolkit=3.0.43=hd3eb1b0_0 + - psutil=5.9.0=py311h5eee18b_0 + - ptyprocess=0.7.0=pyhd3eb1b0_2 + - pure_eval=0.2.2=pyhd3eb1b0_0 + - pycparser=2.21=pyhd3eb1b0_0 + - pygments=2.15.1=py311h06a4308_1 + - pyqt=5.15.10=py311h6a678d5_0 + - pyqt5-sip=12.13.0=py311h5eee18b_0 + - python=3.11.7=h955ad1f_0 + - python-dateutil=2.8.2=pyhd3eb1b0_0 + - python-fastjsonschema=2.16.2=py311h06a4308_0 + - python-json-logger=2.0.7=py311h06a4308_0 + - python-tzdata=2023.3=pyhd3eb1b0_0 + - pytorch=2.2.0=py3.11_cpu_0 + - pytorch-mutex=1.0=cpu + - pytz=2023.3.post1=py311h06a4308_0 + - pyyaml=6.0.1=py311h5eee18b_0 + - pyzmq=25.1.2=py311h6a678d5_0 + - qt-main=5.15.2=h53bd1ea_10 + - qtconsole=5.5.0=py311h06a4308_0 + - qtpy=2.4.1=py311h06a4308_0 + - readline=8.2=h5eee18b_0 + - referencing=0.30.2=py311h06a4308_0 + - requests=2.31.0=py311h06a4308_1 + - rfc3339-validator=0.1.4=py311h06a4308_0 + - rfc3986-validator=0.1.1=py311h06a4308_0 + - rpds-py=0.10.6=py311hb02cf49_0 + - scikit-learn=1.2.2=py311h6a678d5_1 + - scipy=1.11.4=py311h08b1b3b_0 + - send2trash=1.8.2=py311h06a4308_0 + - setuptools=68.2.2=py311h06a4308_0 + - sip=6.7.12=py311h6a678d5_0 + - six=1.16.0=pyhd3eb1b0_1 + - sniffio=1.3.0=py311h06a4308_0 + - soupsieve=2.5=py311h06a4308_0 + - sqlite=3.41.2=h5eee18b_0 + - stack_data=0.2.0=pyhd3eb1b0_0 + - sympy=1.12=py311h06a4308_0 + - tbb=2021.8.0=hdb19cb5_0 + - terminado=0.17.1=py311h06a4308_0 + - threadpoolctl=2.2.0=pyh0d69192_0 + - tinycss2=1.2.1=py311h06a4308_0 + - tk=8.6.12=h1ccaba5_0 + - torchaudio=2.2.0=py311_cpu + - torchvision=0.17.0=py311_cpu + - tornado=6.3.3=py311h5eee18b_0 + - traitlets=5.7.1=py311h06a4308_0 + - typing-extensions=4.9.0=py311h06a4308_1 + - typing_extensions=4.9.0=py311h06a4308_1 + - tzdata=2023d=h04d1e81_0 + - urllib3=2.1.0=py311h06a4308_0 + - wcwidth=0.2.5=pyhd3eb1b0_0 + - webencodings=0.5.1=py311h06a4308_1 + - websocket-client=0.58.0=py311h06a4308_4 + - wheel=0.41.2=py311h06a4308_0 + - widgetsnbextension=4.0.5=py311h06a4308_0 + - xz=5.4.5=h5eee18b_0 + - yaml=0.2.5=h7b6447c_0 + - zeromq=4.3.5=h6a678d5_0 + - zlib=1.2.13=h5eee18b_0 + - zstd=1.5.5=hc292b87_0 +prefix: /home/arthurb/anaconda3/envs/cdbpr-env diff --git a/makefile b/makefile index 39341c59cdf974917a03bc9ec19d01610e80e0c3..743059f791fcf173701995eb2637af76494ee1f5 100644 --- a/makefile +++ b/makefile @@ -1,8 +1,16 @@ -.PHONY: build, clean +.PHONY: build, clean, check_conda -build: +build: check_conda unzip data.zip unzip results.zip - + conda env create --file cdbpr-env.yml clean: rm -rf data/ + +check_conda: + @if command -v conda >/dev/null 2>&1; then \ + echo "conda is installed"; \ + else \ + echo "conda needs to be installed\nrun the makefile again after the installation"; \ + exit 1; \ + fi \ No newline at end of file