From 15503ca9feb3120ba66047cf87f5848b5d0a9472 Mon Sep 17 00:00:00 2001
From: Alice BRENON <alice.brenon@ens-lyon.fr>
Date: Mon, 6 Dec 2021 22:01:23 +0100
Subject: [PATCH] Turn the repos into a (hopefully) proper python package
---
.gitignore | 1 +
comparator.py | 8 +++++---
ene_comparator/__init__.py | 2 ++
editDistance.py => ene_comparator/editDistance.py | 0
sequence.py => ene_comparator/sequence.py | 0
setup.py | 14 ++++++++++++++
6 files changed, 22 insertions(+), 3 deletions(-)
create mode 100644 .gitignore
create mode 100644 ene_comparator/__init__.py
rename editDistance.py => ene_comparator/editDistance.py (100%)
rename sequence.py => ene_comparator/sequence.py (100%)
create mode 100644 setup.py
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..0d20b64
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1 @@
+*.pyc
diff --git a/comparator.py b/comparator.py
index 453af32..d1f44ad 100755
--- a/comparator.py
+++ b/comparator.py
@@ -1,8 +1,7 @@
#!/usr/bin/python3
import argparse
-from sequence import eNESequence
-from editDistance import Metric
+from ene_comparator import eNESequence, Metric
from sys import argv
def getArgs():
@@ -29,7 +28,7 @@ def getMetric(args):
otherWeight = args.otherWeight or 0.
return Metric(missingENE, missingType, wrongType, namesWeight, otherWeight)
-if __name__ == '__main__':
+def main():
args = getArgs()
print(args)
m = getMetric(args)
@@ -38,3 +37,6 @@ if __name__ == '__main__':
print([str(s) for s in leftSequence])
print([str(s) for s in rightSequence])
print(m.differences(leftSequence, rightSequence))
+
+if __name__ == '__main__':
+ main()
diff --git a/ene_comparator/__init__.py b/ene_comparator/__init__.py
new file mode 100644
index 0000000..41ea9c2
--- /dev/null
+++ b/ene_comparator/__init__.py
@@ -0,0 +1,2 @@
+from .editDistance import Metric
+from .sequence import eNESequence
diff --git a/editDistance.py b/ene_comparator/editDistance.py
similarity index 100%
rename from editDistance.py
rename to ene_comparator/editDistance.py
diff --git a/sequence.py b/ene_comparator/sequence.py
similarity index 100%
rename from sequence.py
rename to ene_comparator/sequence.py
diff --git a/setup.py b/setup.py
new file mode 100644
index 0000000..5633a7a
--- /dev/null
+++ b/setup.py
@@ -0,0 +1,14 @@
+from distutils.core import setup
+
+setup(
+ name="ENE-comparator",
+ version="0.1.0",
+ description="yeah, maybe",
+ author="Alice Brenon",
+ author_email="alice.brenon@liris.cnrs.fr",
+ url="https://gitlab.liris.cnrs.fr/abrenon/ene-comparator",
+ packages=["ene_comparator"],
+ install_requires=['lxml'],
+ scripts=['comparator.py'],
+ )
+
--
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