From d594c741049d22163eb0de2445239a626a33e6e9 Mon Sep 17 00:00:00 2001
From: Schneider Leo <leo.schneider@etu.ec-lyon.fr>
Date: Mon, 21 Oct 2024 14:20:09 +0200
Subject: [PATCH] datasets
---
model_custom.py | 10 +---------
1 file changed, 1 insertion(+), 9 deletions(-)
diff --git a/model_custom.py b/model_custom.py
index e4601b3..7f8a7d1 100644
--- a/model_custom.py
+++ b/model_custom.py
@@ -101,22 +101,14 @@ class Model_Common_Transformer(nn.Module):
d_model=self.embedding_dim)
def forward(self, seq, charge):
- print('seq', seq.size())
- print('charge', charge.size())
meta_ohe = torch.nn.functional.one_hot(charge - 1, self.charge_max).float()
- print('meta_ohe', meta_ohe.size())
seq_emb = torch.nn.functional.one_hot(seq, self.nb_aa).float()
- print('seq_emb', seq_emb.size())
emb = self.pos_embedding(self.emb(seq_emb))
- print('emb', emb.size())
meta_enc = self.meta_enc(meta_ohe)
- print('meta_enc', meta_enc.size())
+ print('emb', emb)
enc = self.encoder(emb)
- print('enc', enc.size())
out_rt = self.decoder_RT(enc)
- print('out_rt', out_rt.size())
int_enc = torch.mul(enc, meta_enc)
- print('out_rt', out_rt.size())
out_int = self.decoder_int(int_enc)
return out_rt.flatten(), out_int
--
GitLab