From e75d9ee83fec96fd3af5adaa5074553900ccf3ab Mon Sep 17 00:00:00 2001
From: schne <leo.schneider@ecl19.ec-lyon.fr>
Date: Wed, 20 Dec 2023 11:46:51 +0100
Subject: [PATCH] cutting routine
---
seq_cutting.py | 17 +++++++++++++++--
1 file changed, 15 insertions(+), 2 deletions(-)
diff --git a/seq_cutting.py b/seq_cutting.py
index 6e9879b..620503f 100644
--- a/seq_cutting.py
+++ b/seq_cutting.py
@@ -31,11 +31,24 @@ def cut(seq, format):
for i in range(l):
if seq[i] == 'A' or seq[i] == 'L':
if i < l - 1 and seq[i + 1] != 'P':
- cuts.append(i)
+ cuts.append(i + 1)
if format == 'numerical':
for i in range(l):
if seq[i] == 1 or seq[i] == 10:
if i < l - 1 and seq[i + 1] != 13:
- cuts.append(i)
+ cuts.append(i + 1)
return cuts
+
+
+def cut_with_ind(seq, ind_list):
+ l = []
+ size = len(seq)
+ ind_list.append(size)
+
+ for i in range(len(ind_list) - 1):
+ if i == 0:
+ l.append(seq[:ind_list[i]])
+ l.append(seq[ind_list[i]:ind_list[i + 1]])
+
+ return l
--
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