From aac128da47304725baf68bc25c094a8e30f94cb6 Mon Sep 17 00:00:00 2001
From: Schneider Leo <leo.schneider@etu.ec-lyon.fr>
Date: Wed, 22 Jan 2025 12:36:26 +0100
Subject: [PATCH] data processing for jz
---
data/data_processing.py | 29 ++++++++++++++++++++++++++++-
1 file changed, 28 insertions(+), 1 deletion(-)
diff --git a/data/data_processing.py b/data/data_processing.py
index a8a1202..a40b2d9 100644
--- a/data/data_processing.py
+++ b/data/data_processing.py
@@ -2,7 +2,34 @@ import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
# from loess.loess_1d import loess_1d
-from constant import ALPHABET_UNMOD_REV
+
+ALPHABET_UNMOD = {
+ "": 0,
+ "A": 1,
+ "C": 2,
+ "D": 3,
+ "E": 4,
+ "F": 5,
+ "G": 6,
+ "H": 7,
+ "I": 8,
+ "K": 9,
+ "L": 10,
+ "M": 11,
+ "N": 12,
+ "P": 13,
+ "Q": 14,
+ "R": 15,
+ "S": 16,
+ "T": 17,
+ "V": 18,
+ "W": 19,
+ "Y": 20,
+ "OxM": 21,
+ "CaC": 22
+}
+
+ALPHABET_UNMOD_REV = {v: k for k, v in ALPHABET_UNMOD.items()}
# def align(dataset, reference, column_dataset, column_ref, seq_data, seq_ref):
--
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