From 26bffa3f8146d71f3bef2b13bc08be829c573d43 Mon Sep 17 00:00:00 2001
From: Schneider Leo <leo.schneider@etu.ec-lyon.fr>
Date: Wed, 8 Jan 2025 15:36:21 +0100
Subject: [PATCH] empty line fix
---
main.py | 20 +++++++++++---------
1 file changed, 11 insertions(+), 9 deletions(-)
diff --git a/main.py b/main.py
index 54f2c28..cc98a85 100644
--- a/main.py
+++ b/main.py
@@ -8,15 +8,16 @@ def fasta_like_to_data(path):
file = open(path, "r")
content = file.readlines()
file.close()
- return content
+ res = []
+ for l in content :
+ if l!='\n':
+ res.append(l)
+ return res
def strip_lines(s):
s = s.strip('\n')
- try :
- s = s.split(' ')[1]
- return s
- except:
- return 'unidentifid seq error'
+ s = s.split(' ')[1]
+ return s
def main(input_data_path):
print('Reading file')
@@ -80,9 +81,9 @@ def main(input_data_path):
'Predicted class':label_multi})
print('Saving output')
- result.to_csv(input_data_path.strip('.txt')+'_detectability.csv',index=False) #Output du model dans le fichier 'prediction_detectability.csv'
+ result.to_csv(input_data_path.strip('.txt')+'t_detectability.csv',index=False) #Output du model dans le fichier 'prediction_detectability.csv'
- new_file = open(input_data_path.strip('.txt')+'_filtered.txt','w')
+ new_file = open(input_data_path.strip('.txt')+'t_filtered.txt','w')
print('Writting final file')
i,j=0,1
@@ -96,8 +97,9 @@ def main(input_data_path):
i+=1
j+=1
else :
+ print(l)
i+=1
new_file.close()
if __name__ == '__main__':
- main('250107_FASTA_RP_GroEL_GroES_Tuf_5pct_assemble_peptides_list.txt')
\ No newline at end of file
+ main('250107_FASTA_RP_GroEL_GroES_Tuf_5pct_assemble_peptides_list.txt')
--
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