From 8ab55ea31fcc54fcbccd12897afc296b5f4aca72 Mon Sep 17 00:00:00 2001
From: Schneider Leo <leo.schneider@etu.ec-lyon.fr>
Date: Wed, 11 Jun 2025 16:52:49 +0200
Subject: [PATCH] change : absolute path for image dataset and DLLs
---
image_processing/build_dataset.py | 1 +
1 file changed, 1 insertion(+)
diff --git a/image_processing/build_dataset.py b/image_processing/build_dataset.py
index 7b1219e..3cb2165 100644
--- a/image_processing/build_dataset.py
+++ b/image_processing/build_dataset.py
@@ -108,6 +108,7 @@ def create_antibio_dataset(path='/data/label_raw/230804_strain_peptides_antibiog
:param path: excel path
:return: dataframe
"""
+ print('base path ', base_path, 'path : ',os.path.join(base_path,path))
df = pd.read_excel(os.path.join(base_path,path), header=1)
df = df[['sample_name','species','AMC (disk)','AMK (disk)','AMK (mic)','AMK (vitek)','AMP (vitek)','AMX (disk)',
'AMX (vitek)','ATM (disk)','ATM (vitek)','CAZ (disk)','CAZ (mic)','CAZ (vitek)','CHL (vitek)','CIP (disk)',
--
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