diff --git a/image_ref/img_ref_swaped/Citrobacter amalonaticus.npy b/image_ref/img_ref_swaped/Citrobacter amalonaticus.npy new file mode 100644 index 0000000000000000000000000000000000000000..05242c12de3b78caa8d35f3f9116ecf22aec4e6e Binary files /dev/null and b/image_ref/img_ref_swaped/Citrobacter amalonaticus.npy differ diff --git a/image_ref/img_ref_swaped/Citrobacter braakii.npy b/image_ref/img_ref_swaped/Citrobacter braakii.npy new file mode 100644 index 0000000000000000000000000000000000000000..4129660fe6429874527cde53421076ea5acc290b Binary files /dev/null and b/image_ref/img_ref_swaped/Citrobacter braakii.npy differ diff --git a/image_ref/img_ref_swaped/Citrobacter cronae.npy b/image_ref/img_ref_swaped/Citrobacter cronae.npy new file mode 100644 index 0000000000000000000000000000000000000000..e73a0c383a6b44df3c9f524e1b1094f91f632f4f Binary files /dev/null and b/image_ref/img_ref_swaped/Citrobacter cronae.npy differ diff --git a/image_ref/img_ref_swaped/Citrobacter farmeri.npy b/image_ref/img_ref_swaped/Citrobacter farmeri.npy new file mode 100644 index 0000000000000000000000000000000000000000..9de63525d9062e67027ab8434b0b7e78dbcba432 Binary files /dev/null and b/image_ref/img_ref_swaped/Citrobacter farmeri.npy differ diff --git a/image_ref/img_ref_swaped/Citrobacter freundii.npy b/image_ref/img_ref_swaped/Citrobacter freundii.npy new file mode 100644 index 0000000000000000000000000000000000000000..fa05f34e8929f52f20b41d5c73bdedff61fd609f Binary files /dev/null and b/image_ref/img_ref_swaped/Citrobacter freundii.npy differ diff --git a/image_ref/img_ref_swaped/Citrobacter koseri.npy b/image_ref/img_ref_swaped/Citrobacter koseri.npy new file mode 100644 index 0000000000000000000000000000000000000000..1001d5abcf08290bdc7efb83cfc119a4bfc35998 Binary files /dev/null and b/image_ref/img_ref_swaped/Citrobacter koseri.npy differ diff --git a/image_ref/img_ref_swaped/Citrobacter portucalensis.npy b/image_ref/img_ref_swaped/Citrobacter portucalensis.npy new file mode 100644 index 0000000000000000000000000000000000000000..81809b2a064cd4ae1b454216f63d63d0889b116f Binary files /dev/null and b/image_ref/img_ref_swaped/Citrobacter portucalensis.npy differ diff --git a/image_ref/img_ref_swaped/Enterobacter asburiae.npy b/image_ref/img_ref_swaped/Enterobacter asburiae.npy new file mode 100644 index 0000000000000000000000000000000000000000..a9eb7f0d1ae8333524f140a3d0dd6e11df8d33f4 Binary files /dev/null and b/image_ref/img_ref_swaped/Enterobacter asburiae.npy differ diff --git a/image_ref/img_ref_swaped/Enterobacter bugandensis.npy b/image_ref/img_ref_swaped/Enterobacter bugandensis.npy new file mode 100644 index 0000000000000000000000000000000000000000..e734f68f8301383947957c69c4890087013080ea Binary files /dev/null and b/image_ref/img_ref_swaped/Enterobacter bugandensis.npy differ diff --git a/image_ref/img_ref_swaped/Enterobacter chengduensis.npy b/image_ref/img_ref_swaped/Enterobacter chengduensis.npy new file mode 100644 index 0000000000000000000000000000000000000000..39fb637f146691710cd68f2ccfb081a3969fae08 Binary files /dev/null and b/image_ref/img_ref_swaped/Enterobacter chengduensis.npy differ diff --git a/image_ref/img_ref_swaped/Enterobacter cloacae.npy b/image_ref/img_ref_swaped/Enterobacter cloacae.npy new file mode 100644 index 0000000000000000000000000000000000000000..2ee61f8ff7e6bbeb7d95c6d3906cbeb941726a2e Binary files /dev/null and b/image_ref/img_ref_swaped/Enterobacter cloacae.npy differ diff --git a/image_ref/img_ref_swaped/Enterobacter hormaechei.npy b/image_ref/img_ref_swaped/Enterobacter hormaechei.npy new file mode 100644 index 0000000000000000000000000000000000000000..2c9f7782b1bf40f1a2d55891ce059f29de66c5e2 Binary files /dev/null and b/image_ref/img_ref_swaped/Enterobacter hormaechei.npy differ diff --git a/image_ref/img_ref_swaped/Enterobacter kobei.npy b/image_ref/img_ref_swaped/Enterobacter kobei.npy new file mode 100644 index 0000000000000000000000000000000000000000..158fb7624bcd46fc345cb1ea1f70760645b5b402 Binary files /dev/null and b/image_ref/img_ref_swaped/Enterobacter kobei.npy differ diff --git a/image_ref/img_ref_swaped/Enterobacter ludwigii.npy b/image_ref/img_ref_swaped/Enterobacter ludwigii.npy new file mode 100644 index 0000000000000000000000000000000000000000..e6854173418927adb515e695608f901c8bd20b7b Binary files /dev/null and b/image_ref/img_ref_swaped/Enterobacter ludwigii.npy differ diff --git a/image_ref/img_ref_swaped/Enterobacter roggenkampii.npy b/image_ref/img_ref_swaped/Enterobacter roggenkampii.npy new file mode 100644 index 0000000000000000000000000000000000000000..4bf29b99a2aa7301536d1138fa6cd1744a277e34 Binary files /dev/null and b/image_ref/img_ref_swaped/Enterobacter roggenkampii.npy differ diff --git a/image_ref/img_ref_swaped/Escherichia coli.npy b/image_ref/img_ref_swaped/Escherichia coli.npy new file mode 100644 index 0000000000000000000000000000000000000000..6cbe637e1482b09aa0d3eb0ea102d471d4ed2949 Binary files /dev/null and b/image_ref/img_ref_swaped/Escherichia coli.npy differ diff --git a/image_ref/img_ref_swaped/Hafnia alvei.npy b/image_ref/img_ref_swaped/Hafnia alvei.npy new file mode 100644 index 0000000000000000000000000000000000000000..2ee3bc34c2bdecfc7a3f0aedb1db2a63f2711876 Binary files /dev/null and b/image_ref/img_ref_swaped/Hafnia alvei.npy differ diff --git a/image_ref/img_ref_swaped/Hafnia paralvei.npy b/image_ref/img_ref_swaped/Hafnia paralvei.npy new file mode 100644 index 0000000000000000000000000000000000000000..bba750970bcdd0823cff3c04f6867accfb8fa05d Binary files /dev/null and b/image_ref/img_ref_swaped/Hafnia paralvei.npy differ diff --git a/image_ref/img_ref_swaped/Klebsiella aerogenes.npy b/image_ref/img_ref_swaped/Klebsiella aerogenes.npy new file mode 100644 index 0000000000000000000000000000000000000000..519a5e9e92cd4b8e336232b4c86f36e88ba5dec3 Binary files /dev/null and b/image_ref/img_ref_swaped/Klebsiella aerogenes.npy differ diff --git a/image_ref/img_ref_swaped/Klebsiella grimontii.npy b/image_ref/img_ref_swaped/Klebsiella grimontii.npy new file mode 100644 index 0000000000000000000000000000000000000000..9949af702b8df2540932bbcdab229e892156588c Binary files /dev/null and b/image_ref/img_ref_swaped/Klebsiella grimontii.npy differ diff --git a/image_ref/img_ref_swaped/Klebsiella michiganensis.npy b/image_ref/img_ref_swaped/Klebsiella michiganensis.npy new file mode 100644 index 0000000000000000000000000000000000000000..d87b322e9a7da9c9422a950b9454bb997406a315 Binary files /dev/null and b/image_ref/img_ref_swaped/Klebsiella michiganensis.npy differ diff --git a/image_ref/img_ref_swaped/Klebsiella oxytoca.npy b/image_ref/img_ref_swaped/Klebsiella oxytoca.npy new file mode 100644 index 0000000000000000000000000000000000000000..03e5b2388a6d1bd0e3611a527025d92342aaaf11 Binary files /dev/null and b/image_ref/img_ref_swaped/Klebsiella oxytoca.npy differ diff --git a/image_ref/img_ref_swaped/Klebsiella pneumoniae.npy b/image_ref/img_ref_swaped/Klebsiella pneumoniae.npy new file mode 100644 index 0000000000000000000000000000000000000000..735c1e5a68620b0dd4e5aa2f140344f0fbe9ccda Binary files /dev/null and b/image_ref/img_ref_swaped/Klebsiella pneumoniae.npy differ diff --git a/image_ref/img_ref_swaped/Klebsiella quasipneumoniae.npy b/image_ref/img_ref_swaped/Klebsiella quasipneumoniae.npy new file mode 100644 index 0000000000000000000000000000000000000000..a7bef622e960942402e2297e3443632d1eb83305 Binary files /dev/null and b/image_ref/img_ref_swaped/Klebsiella quasipneumoniae.npy differ diff --git a/image_ref/img_ref_swaped/Klebsiella variicola.npy b/image_ref/img_ref_swaped/Klebsiella variicola.npy new file mode 100644 index 0000000000000000000000000000000000000000..f1886ea3f710febb0f05183e4ee899cd53b4f2c0 Binary files /dev/null and b/image_ref/img_ref_swaped/Klebsiella variicola.npy differ diff --git a/image_ref/img_ref_swaped/Morganella morganii.npy b/image_ref/img_ref_swaped/Morganella morganii.npy new file mode 100644 index 0000000000000000000000000000000000000000..22d7761d753a69f7f20ef6b8e080b2ed2591b9a5 Binary files /dev/null and b/image_ref/img_ref_swaped/Morganella morganii.npy differ diff --git a/image_ref/img_ref_swaped/Pantoea agglomerans.npy b/image_ref/img_ref_swaped/Pantoea agglomerans.npy new file mode 100644 index 0000000000000000000000000000000000000000..d2b92ca77ed84baa84f17f41331b1098c361aae6 Binary files /dev/null and b/image_ref/img_ref_swaped/Pantoea agglomerans.npy differ diff --git a/image_ref/img_ref_swaped/Pantoea septica.npy b/image_ref/img_ref_swaped/Pantoea septica.npy new file mode 100644 index 0000000000000000000000000000000000000000..c3f49850ba465ccbf7a5ef38aee48cd77d9269d3 Binary files /dev/null and b/image_ref/img_ref_swaped/Pantoea septica.npy differ diff --git a/image_ref/img_ref_swaped/Proteus columbae.npy b/image_ref/img_ref_swaped/Proteus columbae.npy new file mode 100644 index 0000000000000000000000000000000000000000..ed8a3f9c5d1e5a214f3389bb6d5fa57c9f60be17 Binary files /dev/null and b/image_ref/img_ref_swaped/Proteus columbae.npy differ diff --git a/image_ref/img_ref_swaped/Proteus mirabilis.npy b/image_ref/img_ref_swaped/Proteus mirabilis.npy new file mode 100644 index 0000000000000000000000000000000000000000..10ae2691a0bdefd4a49980e557c4ac5bd30042b8 Binary files /dev/null and b/image_ref/img_ref_swaped/Proteus mirabilis.npy differ diff --git a/image_ref/img_ref_swaped/Proteus penneri.npy b/image_ref/img_ref_swaped/Proteus penneri.npy new file mode 100644 index 0000000000000000000000000000000000000000..406d7ae3f9700006145289ad716a2e287ea908e7 Binary files /dev/null and b/image_ref/img_ref_swaped/Proteus penneri.npy differ diff --git a/image_ref/img_ref_swaped/Proteus terrae.npy b/image_ref/img_ref_swaped/Proteus terrae.npy new file mode 100644 index 0000000000000000000000000000000000000000..6445621ea39bf9380a11cf3d8aebe3a2422f005f Binary files /dev/null and b/image_ref/img_ref_swaped/Proteus terrae.npy differ diff --git a/image_ref/img_ref_swaped/Proteus vulgaris.npy b/image_ref/img_ref_swaped/Proteus vulgaris.npy new file mode 100644 index 0000000000000000000000000000000000000000..7b5bd4fa0fdd3f46a82b08d8595ff0b402a866c3 Binary files /dev/null and b/image_ref/img_ref_swaped/Proteus vulgaris.npy differ diff --git a/image_ref/img_ref_swaped/Providencia rettgeri.npy b/image_ref/img_ref_swaped/Providencia rettgeri.npy new file mode 100644 index 0000000000000000000000000000000000000000..4fa1d8bc0858c1e9bcceba2485b5b3e9637a11b9 Binary files /dev/null and b/image_ref/img_ref_swaped/Providencia rettgeri.npy differ diff --git a/image_ref/img_ref_swaped/Providencia stuartii.npy b/image_ref/img_ref_swaped/Providencia stuartii.npy new file mode 100644 index 0000000000000000000000000000000000000000..5730af70ce7bcb4a46c04e8297cb5bcfe6aebdf6 Binary files /dev/null and b/image_ref/img_ref_swaped/Providencia stuartii.npy differ diff --git a/image_ref/img_ref_swaped/Raoultella ornithinolytica.npy b/image_ref/img_ref_swaped/Raoultella ornithinolytica.npy new file mode 100644 index 0000000000000000000000000000000000000000..0c59ab2200aa2bd9e6903446c5d32f03b5439f86 Binary files /dev/null and b/image_ref/img_ref_swaped/Raoultella ornithinolytica.npy differ diff --git a/image_ref/img_ref_swaped/Salmonella enterica.npy b/image_ref/img_ref_swaped/Salmonella enterica.npy new file mode 100644 index 0000000000000000000000000000000000000000..59d43c57f10104809cd993bcda1165dc3574e4d1 Binary files /dev/null and b/image_ref/img_ref_swaped/Salmonella enterica.npy differ diff --git a/image_ref/img_ref_swaped/Serratia marcescens.npy b/image_ref/img_ref_swaped/Serratia marcescens.npy new file mode 100644 index 0000000000000000000000000000000000000000..879729d3af76e9340b3b150d589dde2ca42aeefb Binary files /dev/null and b/image_ref/img_ref_swaped/Serratia marcescens.npy differ diff --git a/image_ref/main_sweep.py b/image_ref/main_sweep.py index ac6d761775055da458d7848220039b5e7b1ac4ec..dee17a09be1168451be517db61c5b9f774f873cb 100644 --- a/image_ref/main_sweep.py +++ b/image_ref/main_sweep.py @@ -38,5 +38,5 @@ if __name__ == '__main__': elif v["distribution"]=="log_uniform_values": run_config[p] = np.exp(random.uniform(np.log(v["min"]), np.log(v["max"]))) print('Launching run ',i) - print('Parameter : ', sweep_configuration["parameters"]) + print('Parameter : ', run_config) run_duo(run_config)