From 07b3e7709da86751db3babcd2bef37458fca2076 Mon Sep 17 00:00:00 2001
From: George Marchment <georgemarchment@yahoo.fr>
Date: Wed, 7 Feb 2024 13:23:16 +0100
Subject: [PATCH] Remove some files from output (outdated)
---
src/call.py | 2 +-
src/nextflow_file.py | 30 +++++++++++++++---------------
2 files changed, 16 insertions(+), 16 deletions(-)
diff --git a/src/call.py b/src/call.py
index 7740b65..826778d 100644
--- a/src/call.py
+++ b/src/call.py
@@ -427,7 +427,7 @@ class Call(Executor):
def initialise(self):
self.analyse_call(self.get_code(clean_pipe = True))
self.write_summary()
- self.add_call_count()
+ #self.add_call_count()
diff --git a/src/nextflow_file.py b/src/nextflow_file.py
index 6e94bfc..771a3e1 100644
--- a/src/nextflow_file.py
+++ b/src/nextflow_file.py
@@ -44,7 +44,7 @@ class Nextflow_File(Nextflow_Building_Blocks):
self.added_2_rocrate = False
self.check_file_correctness()
self.set_DSL(DSL=DSL)
- self.extract_metadata()
+ #self.extract_metadata()
self.check_file_correctness_after_DSL()
self.set_null()
@@ -539,20 +539,20 @@ class Nextflow_File(Nextflow_Building_Blocks):
sub.initialise()
indice+=1
- if(self.first_file):
- number_process_used = 0
- with open(self.output_dir / 'debug/processes_used.json') as json_file:
- dict = json.load(json_file)
- for file in dict:
- number_process_used+=len(set(dict[file]))
-
- with open(self.output_dir / "general.json") as json_file:
- dico_wf = json.load(json_file)
-
- #dico_wf["processes"]["number used"] = number_process_used
-
- with open(self.output_dir / "general.json", "w") as outfile:
- json.dump(dico_wf, outfile, indent=4)
+ #if(self.first_file):
+ # number_process_used = 0
+ # with open(self.output_dir / 'debug/processes_used.json') as json_file:
+ # dict = json.load(json_file)
+ # for file in dict:
+ # number_process_used+=len(set(dict[file]))
+ #
+ # with open(self.output_dir / "general.json") as json_file:
+ # dico_wf = json.load(json_file)
+ #
+ # #dico_wf["processes"]["number used"] = number_process_used
+ #
+ # with open(self.output_dir / "general.json", "w") as outfile:
+ # json.dump(dico_wf, outfile, indent=4)
elif(self.get_DSL()=="DSL1"):
--
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