From 307054a1fdee43654bd40c7287070cb2dc791899 Mon Sep 17 00:00:00 2001
From: George Marchment <georgemarchment@yahoo.fr>
Date: Mon, 15 Apr 2024 15:43:11 +0200
Subject: [PATCH] add option to get file extension
---
src/process.py | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/src/process.py b/src/process.py
index 39fb908..12b3eea 100644
--- a/src/process.py
+++ b/src/process.py
@@ -216,6 +216,27 @@ class Process(Nextflow_Building_Blocks):
#Method that returns the input part of the process code
def get_output_code(self):
return self.output_code
+
+ def get_file_extensions_outputs(self):
+ code = self.get_output_code()
+ extensions = []
+ for match in re.finditer(r"(\.\w+)+|\.\w+", code):
+ extensions.append(match.group(0))
+ return extensions
+
+ def get_input_parameters(self):
+ code = self.get_input_code()
+ parameters = []
+ for match in re.finditer(r"\w+", code):
+ parameters.append(match.group(0))
+ parameters = list(set(parameters))#Here we can a unique cause a parameter can only be given once in any case
+ words_2_remove = ["path", "val", "tuple", "into", "stageAs", "emit"]
+ for word in words_2_remove:
+ try:
+ parameters.remove(word)
+ except:
+ None
+ return parameters
def get_modules(self):
return self.modules
--
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