From 72f3e1baecc94c2bcf44954f9d8d775a850586d5 Mon Sep 17 00:00:00 2001
From: George Marchment <georgemarchment@yahoo.fr>
Date: Thu, 12 Dec 2024 12:38:30 +0100
Subject: [PATCH] Fixed duplicate problem
---
src/call.py | 17 ++++++++++++-----
src/process.py | 7 +++++++
2 files changed, 19 insertions(+), 5 deletions(-)
diff --git a/src/call.py b/src/call.py
index 44077b4..079cb9e 100644
--- a/src/call.py
+++ b/src/call.py
@@ -1,5 +1,6 @@
import re
import json
+import copy
from .code_ import Code
@@ -376,11 +377,17 @@ class Call(Executor):
subworkflow = self.get_subworkflow_from_name(tab_call[0])
fun = self.get_function_from_name(tab_call[0])
if(process!=None and subworkflow==None and fun==None):
- #temp = process
- ##If the lements need to duplicated -> then we need to duplicate it
- #if(self.get_duplicate_status()):
- self.first_element_called = process
- #print(process.get_name(), process.call)
+ #If the lements need to duplicated -> then we need to duplicate it
+ temp = process
+ if(self.get_duplicate_status()):
+ print(process.get_number_times_called())
+ if(process.get_number_times_called()>0):
+ print("here")
+ temp = copy.deepcopy(process)
+ temp.set_alias(f"{process.get_name()}_{process.get_number_times_called()}")
+ self.first_element_called = temp
+ temp.incremente_number_times_called()
+ print(process.get_name(), process.call)
if(process==None and subworkflow!=None and fun==None):
self.first_element_called = subworkflow
if(process==None and subworkflow==None and fun!=None):
diff --git a/src/process.py b/src/process.py
index 3d7a1c8..44c2ad8 100644
--- a/src/process.py
+++ b/src/process.py
@@ -30,11 +30,18 @@ class Process(Nextflow_Building_Blocks):
self.initialise()
self.initialised = True
self.call = []
+ self.number_times_called = 0
##It's important this is last
#self.condition = Condition(self)
def set_alias(self, alias):
self.alias = alias
+
+ def get_number_times_called(self):
+ return self.number_times_called
+
+ def incremente_number_times_called(self):
+ self.number_times_called+=1
def set_call(self, call):
self.call.append(call)
--
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