diff --git a/src/code_.py b/src/code_.py index ce88418b5b22fc9adab0259d4c42abbea564a086..0213fc4f9735d775c34b3bc6fa2c673b7dcb6f79 100644 --- a/src/code_.py +++ b/src/code_.py @@ -137,7 +137,7 @@ class Code: #TODO -> do the same with flatMap -> 668 for word in ["map", "flatMap"]: for end_char in ['{', '\(']: - pattern = fr"\.\s*"+word+r"\s*"+end_char + pattern = fr"(\.|\|)\s*"+word+r"\s*"+end_char for match in re.finditer(pattern, code): start_map, end = match.span(0) if(end_char=="{"): diff --git a/src/workflow.py b/src/workflow.py index 976170dbd3935b9f2cc374515eda43580b0dcc7f..724d5a1f53ae710136e6d0a1411ee7f918fffba0 100644 --- a/src/workflow.py +++ b/src/workflow.py @@ -1079,7 +1079,9 @@ George Marchment, Bryan Brancotte, Marie Schmit, Frédéric Lemoine, Sarah Cohen code = self.simplify_workflow_code() self.rewrite_and_initialise(code, self.processes_2_remove, render_graphs=render_graphs) - + if(len(self.get_processes_called())==0): + raise BioFlowInsightError("There are no process calls in the workflow. BioFlow-Insight cannot rewrite the workflow in this case.", type="Rewrite Error") + #DETERMING WHICH SUBWORKFLOWS ARE BROKEN WITH THE CLUSTER def get_clusters_with_calls(clusters): #Creating the clusters with calls instead of processes or subworkflows