From e82af601dd305ba9f4275723b5ce89b5def53848 Mon Sep 17 00:00:00 2001
From: George Marchment <georgemarchment@yahoo.fr>
Date: Wed, 26 Mar 2025 11:37:13 +0100
Subject: [PATCH] Remove the GGs
---
src/workflow.py | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/src/workflow.py b/src/workflow.py
index 11bcd97..10c4d0c 100644
--- a/src/workflow.py
+++ b/src/workflow.py
@@ -743,7 +743,11 @@ George Marchment, Bryan Brancotte, Marie Schmit, Frédéric Lemoine, Sarah Cohen
return emits
-
+ def remove_GG_from_code(self, code):
+ def replacer(match):
+ return match.group(1)
+ return re.sub(f"(\w+)_GG_\d+", replacer, code)
+
#Method which rewrites the workflow follwong the user view
#Conert workflow to user_view only makes sense when the option duplicate is activated -> otherwise is doesn't make sense + it makes the analysis way more complicated
def convert_workflow_2_user_view(self, relevant_processes = [], render_graphs = True):
@@ -1172,6 +1176,7 @@ George Marchment, Bryan Brancotte, Marie Schmit, Frédéric Lemoine, Sarah Cohen
code = code.replace("$OR$", "||")
code = self.put_modified_operations_back(code, map_element_dico)
code = remove_extra_jumps(format_with_tabs(code))
+ code = self.remove_GG_from_code(code)
f = open(self.get_output_dir()/ "debug" / "rewritten.nf", "w")
f.write(code)
f.close()
--
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