[0KRunning with gitlab-runner 16.9.1 (782c6ecb)[0;m
[0K on sharefair2-runner-runner-84964c6cf9-wlkwc FaDHXWSiN, system ID: r_aV28EZM10qRA[0;m
section_start:1742985456:prepare_executor
[0K[0K[36;1mPreparing the "kubernetes" executor[0;m[0;m
[0KUsing Kubernetes namespace: gitlab-runner[0;m
[0KUsing Kubernetes executor with image python:3.8 ...[0;m
[0KUsing attach strategy to execute scripts...[0;m
section_end:1742985456:prepare_executor
[0Ksection_start:1742985456:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
[0KUsing FF_USE_POD_ACTIVE_DEADLINE_SECONDS, the Pod activeDeadlineSeconds will be set to the job timeout: 1h0m0s...[0;m
Waiting for pod gitlab-runner/runner-fadhxwsin-project-1569-concurrent-0-wj2v1gsh to be running, status is Pending
Waiting for pod gitlab-runner/runner-fadhxwsin-project-1569-concurrent-0-wj2v1gsh to be running, status is Pending
ContainersNotInitialized: "containers with incomplete status: [init-permissions]"
ContainersNotReady: "containers with unready status: [build helper]"
ContainersNotReady: "containers with unready status: [build helper]"
Waiting for pod gitlab-runner/runner-fadhxwsin-project-1569-concurrent-0-wj2v1gsh to be running, status is Pending
ContainersNotInitialized: "containers with incomplete status: [init-permissions]"
ContainersNotReady: "containers with unready status: [build helper]"
ContainersNotReady: "containers with unready status: [build helper]"
Waiting for pod gitlab-runner/runner-fadhxwsin-project-1569-concurrent-0-wj2v1gsh to be running, status is Pending
ContainersNotInitialized: "containers with incomplete status: [init-permissions]"
ContainersNotReady: "containers with unready status: [build helper]"
ContainersNotReady: "containers with unready status: [build helper]"
Running on runner-fadhxwsin-project-1569-concurrent-0-wj2v1gsh via sharefair2-runner-runner-84964c6cf9-wlkwc...
section_end:1742985473:prepare_script
[0Ksection_start:1742985473:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Initialized empty Git repository in /builds/sharefair/bioflow-insight/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out e82af601 as detached HEAD (ref is Clean-Code)...[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1742985476:get_sources
[0Ksection_start:1742985476:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[32;1m$ apt update && apt install -y graphviz[0;m
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
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Reading package lists...
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68 packages can be upgraded. Run 'apt list --upgradable' to see them.
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
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The following additional packages will be installed:
fonts-liberation2 libabsl20220623 libann0 libavif15 libcdt5 libcgraph6
libgav1-1 libgd3 libgts-0.7-5 libgts-bin libgvc6 libgvpr2 liblab-gamut1
libpathplan4 librav1e0 libsvtav1enc1 libxaw7 libxmu6 libxpm4 libyuv0
Suggested packages:
gsfonts graphviz-doc libgd-tools
The following NEW packages will be installed:
fonts-liberation2 graphviz libabsl20220623 libann0 libavif15 libcdt5
libcgraph6 libgav1-1 libgd3 libgts-0.7-5 libgts-bin libgvc6 libgvpr2
liblab-gamut1 libpathplan4 librav1e0 libsvtav1enc1 libxaw7 libxmu6 libxpm4
libyuv0
0 upgraded, 21 newly installed, 0 to remove and 68 not upgraded.
Need to get 7838 kB of archives.
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Get:10 http://deb.debian.org/debian bookworm/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB]
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Get:17 http://deb.debian.org/debian bookworm/main amd64 liblab-gamut1 amd64 2.42.2-7+deb12u1 [197 kB]
Get:18 http://deb.debian.org/debian bookworm/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB]
Get:19 http://deb.debian.org/debian bookworm/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB]
Get:20 http://deb.debian.org/debian bookworm/main amd64 graphviz amd64 2.42.2-7+deb12u1 [611 kB]
Get:21 http://deb.debian.org/debian bookworm/main amd64 libgts-bin amd64 0.7.6+darcs121130-5+b1 [50.3 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libabsl20220623:amd64 (20220623.1-1) ...
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Setting up libgav1-1:amd64 (0.18.0-1+b1) ...
Setting up libcdt5:amd64 (2.42.2-7+deb12u1) ...
Setting up libcgraph6:amd64 (2.42.2-7+deb12u1) ...
Setting up libyuv0:amd64 (0.0~git20230123.b2528b0-1) ...
Setting up libgts-bin (0.7.6+darcs121130-5+b1) ...
Setting up libavif15:amd64 (0.11.1-1) ...
Setting up libgd3:amd64 (2.3.3-9) ...
Setting up libgvc6 (2.42.2-7+deb12u1) ...
Setting up libgvpr2:amd64 (2.42.2-7+deb12u1) ...
Setting up graphviz (2.42.2-7+deb12u1) ...
Processing triggers for libc-bin (2.36-9+deb12u8) ...
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[32;1m$ pip install -e .[dev][0;m
Obtaining file:///builds/sharefair/bioflow-insight
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Checking if build backend supports build_editable: started
Checking if build backend supports build_editable: finished with status 'done'
Getting requirements to build editable: started
Getting requirements to build editable: finished with status 'done'
Preparing editable metadata (pyproject.toml): started
Preparing editable metadata (pyproject.toml): finished with status 'done'
Collecting numpy~=1.24.4
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Building wheels for collected packages: bioflow-insight
Building editable for bioflow-insight (pyproject.toml): started
Building editable for bioflow-insight (pyproject.toml): finished with status 'done'
Created wheel for bioflow-insight: filename=bioflow_insight-0.0.1.dev0-0.editable-py3-none-any.whl size=18461 sha256=d04e156808482545800426733b0e601bf881ebb90cfa7985ca017a5d9f9a43f1
Stored in directory: /tmp/pip-ephem-wheel-cache-9e2aitvw/wheels/a0/84/b4/b99585a4739773654a548dfeae219178c2f510526a2bd10aa3
Successfully built bioflow-insight
Installing collected packages: zipp, urllib3, typing-extensions, tomli, rfc3986, pyproject_hooks, Pygments, pycparser, platformdirs, pathspec, packaging, numpy, nh3, networkx, mypy-extensions, more-itertools, mdurl, jeepney, idna, graphviz, docutils, coverage, click, charset-normalizer, certifi, backports.tarfile, requests, readme-renderer, markdown-it-py, jaraco.functools, jaraco.context, jaraco.classes, importlib-resources, importlib-metadata, cffi, black, bioflow-insight, rich, requests-toolbelt, id, cryptography, build, SecretStorage, keyring, twine
Successfully installed Pygments-2.19.1 SecretStorage-3.3.3 backports.tarfile-1.2.0 bioflow-insight-0.0.1.dev0 black-23.12.1 build-1.2.2.post1 certifi-2025.1.31 cffi-1.17.1 charset-normalizer-3.4.1 click-8.1.8 coverage-7.6.1 cryptography-44.0.2 docutils-0.20.1 graphviz-0.20.1 id-1.5.0 idna-3.10 importlib-metadata-8.5.0 importlib-resources-6.4.5 jaraco.classes-3.4.0 jaraco.context-6.0.1 jaraco.functools-4.1.0 jeepney-0.9.0 keyring-25.5.0 markdown-it-py-3.0.0 mdurl-0.1.2 more-itertools-10.5.0 mypy-extensions-1.0.0 networkx-3.1 nh3-0.2.21 numpy-1.24.4 packaging-24.2 pathspec-0.12.1 platformdirs-4.3.6 pycparser-2.22 pyproject_hooks-1.2.0 readme-renderer-43.0 requests-2.32.3 requests-toolbelt-1.0.0 rfc3986-2.0.0 rich-13.9.4 tomli-2.2.1 twine-6.1.0 typing-extensions-4.13.0 urllib3-2.2.3 zipp-3.20.2
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
[notice] A new release of pip is available: 23.0.1 -> 25.0.1
[notice] To update, run: pip install --upgrade pip
[32;1m$ export PYTHONPATH="$(pwd)"[0;m
[32;1m$ coverage run --source . run_tests.py[0;m
.
..
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F.FFFFFFFF............................
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======================================================================
FAIL: test_wf12_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 63, in test_wf12_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf13_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 25, in test_wf13_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf15_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 348, in test_wf15_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf17_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 272, in test_wf17_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf18_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 101, in test_wf18_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf1_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 253, in test_wf1_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf2_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 120, in test_wf2_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf3_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 215, in test_wf3_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf4_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 177, in test_wf4_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf5_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 82, in test_wf5_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf6_extraction (test_executor_extraction_per_subworkflow.Test_Executor_Extraction_Per_Subworkflow)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_executor_extraction_per_subworkflow.py", line 139, in test_wf6_extraction
self.assertTrue(set(executors_vals) in saved_sets)
AssertionError: False is not true
======================================================================
FAIL: test_wf12_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 48, in test_wf12_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf13_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 20, in test_wf13_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf15_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 258, in test_wf15_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf17_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 202, in test_wf17_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf18_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 76, in test_wf18_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf1_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 188, in test_wf1_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf2_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 90, in test_wf2_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf3_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 160, in test_wf3_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf4_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 132, in test_wf4_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf5_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 62, in test_wf5_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wf6_extraction (test_workflows_all_executors.Test_All_Executors_Extraction)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_all_executors.py", line 104, in test_wf6_extraction
self.assertTrue(set(dico.values())==set(saved.values()))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf12_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 20, in test_wfwf12_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf12/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf13_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 10, in test_wfwf13_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf13/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf14_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 90, in test_wfwf14_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf14/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf15_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 95, in test_wfwf15_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf15/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf16_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 55, in test_wfwf16_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf16/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf17_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 75, in test_wfwf17_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf17/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf18_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 30, in test_wfwf18_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf18/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf1_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 70, in test_wfwf1_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf1/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf2_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 35, in test_wfwf2_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf2/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf3_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 60, in test_wfwf3_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf3/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf4_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 50, in test_wfwf4_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf4/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf5_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 25, in test_wfwf5_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf5/specification_graph.json'))
AssertionError: False is not true
======================================================================
FAIL: test_wfwf6_simple_duplicate (test_workflows_simple_duplicate.TestWorkflows)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/sharefair/bioflow-insight/tests/test_workflows_simple_duplicate.py", line 40, in test_wfwf6_simple_duplicate
self.assertTrue(w.check_if_json_equal_to_full_structure('tests/ressources/workflows/wf6/specification_graph.json'))
AssertionError: False is not true
----------------------------------------------------------------------
Ran 98 tests in 2.968s
FAILED (failures=35)
The edges ["{'A': 'operation_emit: a', 'B': 'operation_b = sub1.out.a'}", "{'A': 'operation_b', 'B': 'operation_take: b'}"] are missing from the new workflow
The edges ["{'A': 'operation_b', 'B': 'operation_t: b'}", "{'A': 'operation_e: a', 'B': 'operation_b = sub1.out.a'}"] have been added to the new workflow
The edges ["{'A': 'operation_emit: a', 'B': 'operation_b = sub1.out.a'}"] are missing from the new workflow
The edges ["{'A': 'operation_e: a', 'B': 'operation_b = sub1.out.a'}"] have been added to the new workflow
The edges ["{'A': 'operation_b', 'B': 'operation_take: b'}"] are missing from the new workflow
The edges ["{'A': 'operation_b', 'B': 'operation_t: b'}"] have been added to the new workflow
The edges ["{'A': 'operation_M2.out', 'B': 'operation_take: ch'}", "{'A': 'operation_sub_M3.out', 'B': 'operation_take: b'}", "{'A': 'operation_emit: M3.out', 'B': 'operation_sub_M3.out'}", "{'A': 'operation_M1.out', 'B': 'operation_take: ch'}"] are missing from the new workflow
The edges ["{'A': 'operation_M2.out', 'B': 'operation_t: ch'}", "{'A': 'operation_sub_M3.out', 'B': 'operation_t: b'}", "{'A': 'operation_M1.out', 'B': 'operation_t: ch'}", "{'A': 'operation_e: M3.out', 'B': 'operation_sub_M3.out'}"] have been added to the new workflow
The edges ["{'A': 'operation_M3.out', 'B': 'operation_take: b'}"] are missing from the new workflow
The edges ["{'A': 'operation_M3.out', 'B': 'operation_t: b'}"] have been added to the new workflow
The edges ["{'A': 'operation_emit: a', 'B': 'operation_a = sub1()'}", "{'A': 'operation_emit: a', 'B': 'operation_a = sub2()'}"] are missing from the new workflow
The edges ["{'A': 'operation_e: a', 'B': 'operation_a = sub1()'}", "{'A': 'operation_e: a', 'B': 'operation_a = sub2()'}"] have been added to the new workflow
The edges ["{'A': 'operation_emit: M2.out', 'B': 'operation_b = sub2.out'}", "{'A': 'operation_emit: M2.out', 'B': 'operation_a = sub1.out'}"] are missing from the new workflow
The edges ["{'A': 'operation_e: M2.out', 'B': 'operation_b = sub2.out'}", "{'A': 'operation_e: M2.out', 'B': 'operation_a = sub1.out'}"] have been added to the new workflow
The edges ["{'A': 'operation_emit: M2.out', 'B': 'operation_a = sub2()'}", "{'A': 'operation_emit: M2.out', 'B': 'operation_a = sub1()'}"] are missing from the new workflow
The edges ["{'A': 'operation_e: M2.out', 'B': 'operation_a = sub1()'}", "{'A': 'operation_e: M2.out', 'B': 'operation_a = sub2()'}"] have been added to the new workflow
The edges ["{'A': 'operation_Channel.empty()', 'B': 'operation_take: a'}"] are missing from the new workflow
The edges ["{'A': 'operation_Channel.empty()', 'B': 'operation_t: a'}"] have been added to the new workflow
The edges ["{'A': 'operation_emit: M2.out', 'B': 'operation_c = sub1(Channel.empty())'}", "{'A': 'operation_Channel.empty()', 'B': 'operation_take: a'}"] are missing from the new workflow
The edges ["{'A': 'operation_Channel.empty()', 'B': 'operation_t: a'}", "{'A': 'operation_e: M2.out', 'B': 'operation_c = sub1(Channel.empty())'}"] have been added to the new workflow
The edges ["{'A': 'operation_a', 'B': 'operation_take: a'}", "{'A': 'operation_emit: M2.out', 'B': 'operation_c = sub1(a)'}"] are missing from the new workflow
The edges ["{'A': 'operation_a', 'B': 'operation_t: a'}", "{'A': 'operation_e: M2.out', 'B': 'operation_c = sub1(a)'}"] have been added to the new workflow
section_end:1742985583:step_script
[0Ksection_start:1742985583:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1742985584:cleanup_file_variables
[0K[31;1mERROR: Job failed: command terminated with exit code 1
[0;m