data processing with variable mod OxM

data/data_processing.py

@@ -7,7 +7,7 @@ from constant import ALPHABET_UNMOD_REV
 
 def align(dataset, reference, column_dataset, column_ref):
     dataset_unique = dataset[['sequence',column_dataset]].groupby('sequence').mean()
-    reference_unique = reference[['sequence',column_ref]].groupby('sequence').mean()
+    reference_unique = reference[['mod_sequence',column_ref]].groupby('mod_sequence').mean()
     seq_ref = reference_unique.index
     seq_common = dataset_unique.index
     seq_ref = seq_ref.tolist()

data/dataset.py

@@ -24,8 +24,8 @@ ALPHABET_UNMOD = {
     "V": 18,
     "W": 19,
     "Y": 20,
-    "CaC": 21,
-    "OxM": 22
+    "CaC": 22,
+    "OxM": 21
 }