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README.md

BioFlow-Insight-Phyloplace-Workflow-case-study

In this repository, the steps to obtain the Specification graph and the Process dependency graph from the nf-core Phyloplace workflows using BioFlow-Insight are described. To run the analysis, execute the following commands:

pip install bioflow-insight==0.0.28
wget https://github.com/nf-core/phyloplace/archive/35c603c935ef50274a895056551b0c4caa2a2468.zip
unzip 35c603c935ef50274a895056551b0c4caa2a2468.zip
rm 35c603c935ef50274a895056551b0c4caa2a2468.zip
bioflow-insight --processes-to-remove "MULTIQC, CUSTOM_DUMPSOFTWAREVERSIONS" phyloplace-35c603c935ef50274a895056551b0c4caa2a2468/main.nf

unzip might have to be installed. But it can be replaced by an equivalent tool.

The results of the analysis can be found in the results folder and the two graphs can be found in the following addresses:

  • results/graphs/specification_graph.png
  • results/graphs/process_dependency_graph.png
Specification Graph Process Dependency Graph