Skip to content
Snippets Groups Projects
Commit 1969a445 authored by George Marchment's avatar George Marchment
Browse files

update

parent 5960c59c
No related branches found
No related tags found
No related merge requests found
[submodule "github-crawler"]
path = github-crawler
url = https://gitlab.liris.cnrs.fr/sharefair/github-crawler.git
branch = BioFlow-Insight-corpus
[submodule "bioflow-insight"] [submodule "bioflow-insight"]
path = bioflow-insight path = bioflow-insight
url = https://gitlab.liris.cnrs.fr/sharefair/bioflow-insight.git url = https://gitlab.liris.cnrs.fr/sharefair/bioflow-insight.git
...@@ -8,7 +8,9 @@ To run the analysis simply, clone the repository by running this command : ...@@ -8,7 +8,9 @@ To run the analysis simply, clone the repository by running this command :
Then simply execute the Python notebook. Then simply execute the Python notebook.
> Important: Even though the code presented here allows for obtaining the results of the analysis of the large dataset of workflows, including downloading and analyzing the workflows, it does not necessarily guarantee full reproducibility. Since the workflows are downloaded from GitHub, they can continue to evolve (e.g., updates or modifications, or even deletion). In such cases, the results may vary. For the results presented in the paper, the workflows were downloaded on the 16th of February 2024. > `unzip` might have to be installed. But it can be replaced by an equivalent tool.
> Note : To install graphviz, in linux you might need to execute this command `sudo apt install graphviz`
<!--`git submodule update --recursive --remote`--> <!--`git submodule update --recursive --remote`-->
Subproject commit 7b53b437a663d9ec4e70dc9e259b1731b5627639 Subproject commit 2a05d2056ad2e1fcff4892563d3c0bba51dcef2c
...@@ -6,7 +6,7 @@ Tried to access an emit even though the element its emitting has not been called ...@@ -6,7 +6,7 @@ Tried to access an emit even though the element its emitting has not been called
Tried to include a file which doesn't exist 14 Tried to include a file which doesn't exist 14
An include was present in a main or subworkflow 1 An include was present in a main or subworkflow 1
In a pipe operator, the first thing called does not exist 11 In a pipe operator, the first thing called does not exist 11
Syntax error in the code (e.g. not the same of parentheses) 35 Syntax error in the code (e.g. not the same of parentheses) 34
Element (process or subworkflow) is expected to be defined in a file but is not 8 Element (process or subworkflow) is expected to be defined in a file but is not 8
A subworkflow either emits nothing or too many values for use in an operation 20 A subworkflow either emits nothing or too many values for use in an operation 20
A subworkflow or process was defined badly (e.g. multiple input sections, multiple main sections...) 10 A subworkflow or process was defined badly (e.g. multiple input sections, multiple main sections...) 10
......
This diff is collapsed.
Subproject commit bf6322002948c7b3df3657e0bd0e5fd82e7c8bd5
This diff is collapsed.
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment