Conitnue to clean -> Commented the generation of the pos dot

src/nextflow_building_blocks.py

@@ -80,6 +80,9 @@ class Nextflow_Building_Blocks:
     def get_name_file(self):
         return self.origin.get_name_file()
     
+    def get_root_directory(self):
+        return self.origin.get_root_directory()
+    
     def get_rocrate_key(self, dico):
         return f"{self.get_file_address()[len(dico['temp_directory'])+1:]}#{self.get_name()}"
 

src/nextflow_file.py

@@ -208,11 +208,7 @@ class Nextflow_File(Nextflow_Building_Blocks):
     def get_file_address(self):
         return os.path.normpath(self.file)
     
-    def get_root_directory(self):
-        if(self.origin==None):
-            return '/'.join(self.get_file_address().split('/')[:-1])
-        else:
-            return self.origin.get_root_directory()
+    
     
     #Returns either a subworkflow or process from the name
     def get_element_from_name(self, name):

src/outils_graph.py

@@ -146,8 +146,8 @@ def generate_graph_dot(filename, dico, label_node = True, label_edge = True, ren
         fill_dot(dot, dico, label_node, label_edge)
         #metro_dot(dot, dico, relevant_nodes = relevant_nodes)
     dot.save(filename=f'{filename}.dot')
-    dot.format = 'dot'
-    dot.render(filename=f'{filename}_pos')
+    #dot.format = 'dot'
+    #dot.render(filename=f'{filename}_pos')
     if(render_graphs):
         dot.render(filename=f'{filename}.dot', outfile=f'{filename}.png')
 

src/process.py

@@ -461,7 +461,8 @@ class Process(Nextflow_Building_Blocks):
         self.initialise_name()
         self.initialise_parts()
         self.initialise_inputs_outputs()
-        annotations = self.get_processes_annotation()
+        #annotations = self.get_processes_annotation()
+        annotations = None
         if(annotations!=None):
             self.tools = annotations[self.get_code()]["tools"]
             self.commands = annotations[self.get_code()]["commands"]

src/workflow.py

@@ -146,6 +146,9 @@ class Workflow:
         """
         return self.address
     
+    def get_root_directory(self):
+        return '/'.join(self.get_address().split('/')[:-1])
+    
     def get_workflow_directory(self):
         """Method that returns the workflow directory