update metadata

README.md

@@ -2,7 +2,7 @@
 
 
 [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-green.svg)](https://www.gnu.org/licenses/gpl-3.0) 
-[![Version 0.0.11](https://img.shields.io/badge/version-v0.0.11-yellow)]()
+[![Version 0.0.19](https://img.shields.io/badge/version-v0.0.19-yellow)]()
 
 ## Description
 
@@ -125,7 +125,7 @@ The structure of this folder is organised as such :
 └── ro-crate-metadata-rnaseq-nf.json
 ```
 
-* The `ro-crate-metadata-rnaseq-nf.json` describes the workflow following an extended Workflow [RO-Crate](https://www.researchobject.org/ro-crate/) profile. The description of this extended profile can be found [here]() (TODO)
+* The `ro-crate-metadata-rnaseq-nf.json` describes the workflow following an extended Workflow [RO-Crate](https://www.researchobject.org/ro-crate/) profile. The description of this extended profile can be found [here](https://gitlab.liris.cnrs.fr/sharefair/posters/swat4hcls-2024).
 * the `debug` folder contains different intermediary files which are ussefull for debugging
 * the `graphs` folder contains the different graphs which are generated. For each of the 3 graphs described above, **BioFlow-Insight** generates :
   * A `json` file which describes the graph using **BioFlow-Insight** specific format

bioflow_insight_cli/main.py

@@ -8,7 +8,7 @@ from src.workflow import Workflow
 @click.version_option(bioflow_insight_src.__version__)
 @click.argument('main_workflow_path')
 #@click.option('--author', 'author', required=False, help='Author name, extracted otherwise')
-@click.option('--name', 'name', required=False, help='Workflow name, extracted otherwise')
+@click.option('--name', 'name', required=False, help='Workflow name, extracted otherwise (in the case of a Git repo)')
 @click.option('--output-dir', default='./results', help='Where the results will be written')
 @click.option(
     '--no-duplicate',

pyproject.toml

@@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta"
 [project]
 name = "bioflow-insight"
 authors = [
-  { name="George Marchment", email="author@example.com" },
+  { name="George Marchment"},
 ]
 description = "A software to extract and analyze the structure and associated metadata from a Nextflow workflow."
 readme = "README.md"
@@ -26,8 +26,8 @@ version = {attr = "src.__version__"}
 bioflow-insight = "bioflow_insight_cli.main:cli_command"
 
 [project.urls]
-Homepage = "https://github.com/George-Marchment/Newtflow-Structure"
-Issues = "https://github.com/George-Marchment/Newtflow-Structure/issues"
+Homepage = "https://gitlab.liris.cnrs.fr/sharefair/bioflow-insight"
+Issues = "https://gitlab.liris.cnrs.fr/sharefair/bioflow-insight/-/issues"
 
 [tool.setuptools]
 packages = [