Fixed weird bug

src/block.py

@@ -7,11 +7,6 @@ class Block(Root):
         Root.__init__(self = self, code = code, origin = origin, modules_defined = modules_defined, subworkflow_inputs = existing_channels)
         self.condition = Condition(origin=self, condition = condition)
 
-    def delete(self):
-        super().delete()
-        self.condition.delete()
-        del self.condition
-
     def initialise(self):
         if(self.condition.value not in self.origin.get_conditions_2_ignore()):
             return super().initialise()

src/call.py

@@ -26,9 +26,7 @@ class Call(Executor):
         #It's important this is last
         #self.condition = Condition(self)
 
-    def delete(self):
-        self.condition.delete()
-        del self.condition
+
      
     #This method returns all the calls inside a call eg p1(p2(), p3()) returns [p1(p2(), p3()), p2(), p3()]
     def get_all_calls(self):

src/channel.py

@@ -16,13 +16,14 @@ class Channel(Nextflow_Building_Blocks):
     def __init__(self, name, origin):
         self.name = name.strip()
         self.origin = origin
+        self.source = []
+        self.sink = []
         to_call = []
         for m in self.get_modules_defined():
             to_call.append(m.get_alias())
         if(self.name in to_call):
             raise BioFlowInsightError(f"'{self.name}' is trying to be created as a channel{self.get_string_line(self.origin.get_code())}. It already exists as a process or a subworkflow in the nextflow file.", num = 4, origin=self)
-        self.source = []
-        self.sink = []
+        
 
 
     def get_code(self, get_OG = True):

src/code_.py

@@ -11,9 +11,6 @@ class Code:
         self.initialise()
         #self.check_its_nextflow()
 
-    def delete(self):
-        del self.code
-        del self.code_wo_comments
 
     
     def initialise(self):

src/executor.py

@@ -20,7 +20,7 @@ class Executor(Nextflow_Building_Blocks):
     def __init__(self, code, origin):
         self.origin = origin
         self.code = Code(code = code, origin = self)
-        self.condition = None
+
         
         
 

src/main.py

@@ -73,7 +73,7 @@ class Main(Nextflow_Building_Blocks):
 
             #Check that includes are not defined in the main or subworkflows
             self.check_includes()
-            self.root = Root(code=self.get_code(), origin=self, modules_defined=self.modules_defined)
+            self.root = Root(code=self.get_code(), origin=self, modules_defined=self.modules_defined, subworkflow_inputs = [])
             self.root.initialise()
 
 

src/nextflow_building_blocks.py

@@ -13,14 +13,7 @@ from .bioflowinsighterror import BioFlowInsightError
 class Nextflow_Building_Blocks:
     def __init__(self, code):
         self.code = Code(code = code, origin = self)
-
-    def delete(self):
-        self.code.delete()
-        del self.code
-
-        
-
-
+    
     #---------------------------------
     #AUXILIARY METHODS FOR ALL CLASSES
     #---------------------------------

src/nextflow_file.py

@@ -307,7 +307,6 @@ class Nextflow_File(Nextflow_Building_Blocks):
                 from .main import Main
                 #Extarct Processes
                 self.extract_processes()
-                print(len(self.processes))
                 code = self.get_code()
                 #Replacing the processes defined with their identifiers -> this is to simplifly the analysis with the conditions
                 for process in self.processes: