fix weird bug where processes defined previously were kept

src/nextflow_file.py

@@ -296,11 +296,13 @@ class Nextflow_File(Nextflow_Building_Blocks):
         raise Exception(f"Process '{name}' couldn't be found in '{self.get_file_address()}'")
 
 
-    def get_processes_defined(self, tab = []):
-        tab+= super().get_processes()
+    def get_processes_defined(self, dict = {}):
+        processes = self.get_processes()
+        for p in processes:
+            dict[p] = []
         for include in self.includes:
-            tab+=include.get_file().get_processes_defined()
-        return list(set(tab))
+            _ = include.get_file().get_processes_defined(dict = dict)
+        return dict
 
 
     def get_processes_called(self, tab = []):

src/workflow.py

@@ -225,7 +225,8 @@ class Workflow:
         self.nextflow_file.add_2_rocrate(dico)
 
     def get_processes_defined(self):
-        return self.nextflow_file.get_processes_defined()
+        processes = self.nextflow_file.get_processes_defined(dict={}).keys()
+        return list(processes)
     
     def get_processes_called(self):
         return self.nextflow_file.get_processes_called()