Got a one to one mapping between the output of the view user + rewrite -> the only expection is that sometimes the userview graph may have extra edges cause it's possible that i group together 2 operations (which isn't shown in the process dependency graph)

Update the image representation of the user view + update the calucle of the profiles (need to find the parameters)

Updated the rewrite of the subowrkflow into the main -> if the emit is complexe it creates a temporary variable

small update to get the generation of the relevant processes to work + removed the creation of empty channels in the case of false condition for the call of the clusters

Started creating profiles + added the option when a non relavant process is being created -> it takes the name from the process with the least used bioinfo tool process

Added case there is a cycle in the workflow and the relevant processes inderectly don't group together -> i raise the error explaining this

Renaming channels inside subworklfows -> to avoid issues when wanting to write the subworkflow in the main (in the case of multiple channels)

Added warning when channels are defined/used multiple times in different blocks -> sometimes breaks the rewrite

Added filter -> i cannot rewrite a workflow in which there is a circular loop with the calls : 'ch = call(ch)' or 'call(ch)\n ch = call.out'

Updated the selection of random processes + updated the extarction of paths and files (there was an issue with the groups)

Added criteria which calculates the general score -> you can ignore certain things depending on the parameters

added function "get_relevant_processes_which_minimize_nb_of_clusters" -> started adding better ways to select the relevant processes

Update function "remove_empty_conditions_place_anker" -> removing the process so that the conditions inside process are not extracted

Added horizontal generation + update the rewrite of operations so that there can be multiple emits be rewritten

Added thr renaming of the emits of subworkflows inside and outiside (outside its at the emiited obkject level) -> it was creating issues when "breaking subworkflows" + remmoved the remove GGs method -> need to do it in a smarter way

3 things added: better script extraction for the processes, detect cycles in relevant processes and stops it (+ generation in random relevant processes) and better rewrite of takes in subworkflow (smart way of doing it)