Update function "remove_empty_conditions_place_anker" -> removing the process so that the conditions inside process are not extracted

Implemented a rewrite which places the clusters based on topological order -> not the first or last place in the code -> but uses the order of execution of the clusters

Adding subworkflow to new code + added negation condition in the creation of channels locally in subworkflows

Added removing the empty conditions on the outside of the clusters and added the functionnality groupping together conditions inside the clusters

added functionnality to extract libraires and packages in R and python in process scripts -> both internal and external