Started creating profiles + added the option when a non relavant process is being created -> it takes the name from the process with the least used bioinfo tool process

Added case there is a cycle in the workflow and the relevant processes inderectly don't group together -> i raise the error explaining this

Renaming channels inside subworklfows -> to avoid issues when wanting to write the subworkflow in the main (in the case of multiple channels)

Added warning when channels are defined/used multiple times in different blocks -> sometimes breaks the rewrite

Added filter -> i cannot rewrite a workflow in which there is a circular loop with the calls : 'ch = call(ch)' or 'call(ch)\n ch = call.out'

Added while upper bound for the while for the extarction of conditions -> gonna do the same for the rest of the whiles

Updated the selection of random processes + updated the extarction of paths and files (there was an issue with the groups)

Added criteria which calculates the general score -> you can ignore certain things depending on the parameters

added function "get_relevant_processes_which_minimize_nb_of_clusters" -> started adding better ways to select the relevant processes

Update the "get_code" fnction for operations ->  when the option 'get_OG' is true -> it remove the added "e:" or "t:" + updated the detection of the duplicates to only consider operations (since calls are renamed anyway)

Update function "remove_empty_conditions_place_anker" -> removing the process so that the conditions inside process are not extracted

Added horizontal generation + update the rewrite of operations so that there can be multiple emits be rewritten