Add initialise condition for the code -> so it doesn't initialises every time (only one when you do the file)

Update simplified calls + updated the remove of elents inside of maps -> it actually removes them and not just puts ''' inside the maps (so it's cleaner now)

Fixed small bug with the rewrite of calls + added rewrite of the map operations + added the generation of the pos dot

Fixed problem with the remove spaces between \. and the jump lines -> it only worked in the case of a single line

Updated function which trabsforms single line conditions into multu line -> to not take into account the single line condition in strings (e.g scripts)

Added single to multi line condition + added multiple analysis when rewriting (to check if this is usefull)

FIX: fix problem remove "\\" -> with the residu "\" -> i don't know why it does that -> "nf-core/imcyto" has that