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George Marchment
@gmarchment
1Running with gitlab-runner 16.0.1 (79704081)
2 on sharefair-runner-runner-6cb69f6556-5jnll fBAkAWLLW, system ID: s_d7da1d7e9a69
3 Preparing the "kubernetes" executor 00:00
4Using Kubernetes namespace: ecoquery
5Using Kubernetes executor with image python:3.11 ...
6Using attach strategy to execute scripts...
7 Preparing environment 00:07
8Waiting for pod ecoquery/runner-fbakawllw-project-1569-concurrent-0wl4st to be running, status is Pending
9Waiting for pod ecoquery/runner-fbakawllw-project-1569-concurrent-0wl4st to be running, status is Pending
10 ContainersNotReady: "containers with unready status: [build helper]"
11 ContainersNotReady: "containers with unready status: [build helper]"
12Running on runner-fbakawllw-project-1569-concurrent-0wl4st via sharefair-runner-runner-6cb69f6556-5jnll...
13 Getting source from Git repository 00:02
14Fetching changes with git depth set to 20...
15Initialized empty Git repository in /builds/sharefair/bioflow-insight/.git/
16Created fresh repository.
17Checking out a4845b37 as detached HEAD (ref is v0.0.30)...
18Skipping Git submodules setup
19 Executing "step_script" stage of the job script 00:40
20$ pip install "setuptools>=62.6"
21Requirement already satisfied: setuptools>=62.6 in /usr/local/lib/python3.11/site-packages (65.5.1)
22WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
23$ pip install -e .[dev]
24Obtaining file:///builds/sharefair/bioflow-insight
25 Installing build dependencies: started
26 Installing build dependencies: finished with status 'done'
27 Checking if build backend supports build_editable: started
28 Checking if build backend supports build_editable: finished with status 'done'
29 Getting requirements to build editable: started
30 Getting requirements to build editable: finished with status 'done'
31 Installing backend dependencies: started
32 Installing backend dependencies: finished with status 'done'
33 Preparing editable metadata (pyproject.toml): started
34 Preparing editable metadata (pyproject.toml): finished with status 'done'
35Collecting graphviz==0.20.1 (from bioflow-insight==0.0.1.dev0)
36 Downloading graphviz-0.20.1-py3-none-any.whl.metadata (12 kB)
37Collecting click (from bioflow-insight==0.0.1.dev0)
38 Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
39Collecting networkx~=3.2.1 (from bioflow-insight==0.0.1.dev0)
40 Downloading networkx-3.2.1-py3-none-any.whl.metadata (5.2 kB)
41Collecting numpy~=1.26.1 (from bioflow-insight==0.0.1.dev0)
42 Downloading numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB)
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44Collecting build (from bioflow-insight==0.0.1.dev0)
45 Downloading build-1.1.1-py3-none-any.whl.metadata (4.2 kB)
46Collecting twine (from bioflow-insight==0.0.1.dev0)
47 Downloading twine-5.0.0-py3-none-any.whl.metadata (3.3 kB)
48Collecting coverage (from bioflow-insight==0.0.1.dev0)
49 Downloading coverage-7.4.3-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.2 kB)
50Collecting black~=23.12.0 (from bioflow-insight==0.0.1.dev0)
51 Downloading black-23.12.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (68 kB)
52 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 69.0/69.0 kB 423.0 kB/s eta 0:00:00
53Collecting mypy-extensions>=0.4.3 (from black~=23.12.0->bioflow-insight==0.0.1.dev0)
54 Downloading mypy_extensions-1.0.0-py3-none-any.whl.metadata (1.1 kB)
55Collecting packaging>=22.0 (from black~=23.12.0->bioflow-insight==0.0.1.dev0)
56 Downloading packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
57Collecting pathspec>=0.9.0 (from black~=23.12.0->bioflow-insight==0.0.1.dev0)
58 Downloading pathspec-0.12.1-py3-none-any.whl.metadata (21 kB)
59Collecting platformdirs>=2 (from black~=23.12.0->bioflow-insight==0.0.1.dev0)
60 Downloading platformdirs-4.2.0-py3-none-any.whl.metadata (11 kB)
61Collecting pyproject_hooks (from build->bioflow-insight==0.0.1.dev0)
62 Downloading pyproject_hooks-1.0.0-py3-none-any.whl.metadata (1.3 kB)
63Collecting pkginfo>=1.8.1 (from twine->bioflow-insight==0.0.1.dev0)
64 Downloading pkginfo-1.10.0-py3-none-any.whl.metadata (11 kB)
65Collecting readme-renderer>=35.0 (from twine->bioflow-insight==0.0.1.dev0)
66 Downloading readme_renderer-43.0-py3-none-any.whl.metadata (2.8 kB)
67Collecting requests>=2.20 (from twine->bioflow-insight==0.0.1.dev0)
68 Downloading requests-2.31.0-py3-none-any.whl.metadata (4.6 kB)
69Collecting requests-toolbelt!=0.9.0,>=0.8.0 (from twine->bioflow-insight==0.0.1.dev0)
70 Downloading requests_toolbelt-1.0.0-py2.py3-none-any.whl.metadata (14 kB)
71Collecting urllib3>=1.26.0 (from twine->bioflow-insight==0.0.1.dev0)
72 Downloading urllib3-2.2.1-py3-none-any.whl.metadata (6.4 kB)
73Collecting importlib-metadata>=3.6 (from twine->bioflow-insight==0.0.1.dev0)
74 Downloading importlib_metadata-7.0.2-py3-none-any.whl.metadata (4.6 kB)
75Collecting keyring>=15.1 (from twine->bioflow-insight==0.0.1.dev0)
76 Downloading keyring-24.3.1-py3-none-any.whl.metadata (20 kB)
77Collecting rfc3986>=1.4.0 (from twine->bioflow-insight==0.0.1.dev0)
78 Downloading rfc3986-2.0.0-py2.py3-none-any.whl.metadata (6.6 kB)
79Collecting rich>=12.0.0 (from twine->bioflow-insight==0.0.1.dev0)
80 Downloading rich-13.7.1-py3-none-any.whl.metadata (18 kB)
81Collecting zipp>=0.5 (from importlib-metadata>=3.6->twine->bioflow-insight==0.0.1.dev0)
82 Downloading zipp-3.18.0-py3-none-any.whl.metadata (3.5 kB)
83Collecting jaraco.classes (from keyring>=15.1->twine->bioflow-insight==0.0.1.dev0)
84 Downloading jaraco.classes-3.3.1-py3-none-any.whl.metadata (2.7 kB)
85Collecting SecretStorage>=3.2 (from keyring>=15.1->twine->bioflow-insight==0.0.1.dev0)
86 Downloading SecretStorage-3.3.3-py3-none-any.whl.metadata (4.0 kB)
87Collecting jeepney>=0.4.2 (from keyring>=15.1->twine->bioflow-insight==0.0.1.dev0)
88 Downloading jeepney-0.8.0-py3-none-any.whl.metadata (1.3 kB)
89Collecting nh3>=0.2.14 (from readme-renderer>=35.0->twine->bioflow-insight==0.0.1.dev0)
90 Downloading nh3-0.2.15-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.7 kB)
91Collecting docutils>=0.13.1 (from readme-renderer>=35.0->twine->bioflow-insight==0.0.1.dev0)
92 Downloading docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB)
93Collecting Pygments>=2.5.1 (from readme-renderer>=35.0->twine->bioflow-insight==0.0.1.dev0)
94 Downloading pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB)
95Collecting charset-normalizer<4,>=2 (from requests>=2.20->twine->bioflow-insight==0.0.1.dev0)
96 Downloading charset_normalizer-3.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB)
97Collecting idna<4,>=2.5 (from requests>=2.20->twine->bioflow-insight==0.0.1.dev0)
98 Downloading idna-3.6-py3-none-any.whl.metadata (9.9 kB)
99Collecting certifi>=2017.4.17 (from requests>=2.20->twine->bioflow-insight==0.0.1.dev0)
100 Downloading certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB)
101Collecting markdown-it-py>=2.2.0 (from rich>=12.0.0->twine->bioflow-insight==0.0.1.dev0)
102 Downloading markdown_it_py-3.0.0-py3-none-any.whl.metadata (6.9 kB)
103Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich>=12.0.0->twine->bioflow-insight==0.0.1.dev0)
104 Downloading mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
105Collecting cryptography>=2.0 (from SecretStorage>=3.2->keyring>=15.1->twine->bioflow-insight==0.0.1.dev0)
106 Downloading cryptography-42.0.5-cp39-abi3-manylinux_2_28_x86_64.whl.metadata (5.3 kB)
107Collecting more-itertools (from jaraco.classes->keyring>=15.1->twine->bioflow-insight==0.0.1.dev0)
108 Downloading more_itertools-10.2.0-py3-none-any.whl.metadata (34 kB)
109Collecting cffi>=1.12 (from cryptography>=2.0->SecretStorage>=3.2->keyring>=15.1->twine->bioflow-insight==0.0.1.dev0)
110 Downloading cffi-1.16.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.5 kB)
111Collecting pycparser (from cffi>=1.12->cryptography>=2.0->SecretStorage>=3.2->keyring>=15.1->twine->bioflow-insight==0.0.1.dev0)
112 Downloading pycparser-2.21-py2.py3-none-any.whl.metadata (1.1 kB)
113Downloading graphviz-0.20.1-py3-none-any.whl (47 kB)
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115Downloading black-23.12.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB)
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119Downloading networkx-3.2.1-py3-none-any.whl (1.6 MB)
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121Downloading numpy-1.26.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB)
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123Downloading build-1.1.1-py3-none-any.whl (19 kB)
124Downloading coverage-7.4.3-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (237 kB)
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126Downloading twine-5.0.0-py3-none-any.whl (37 kB)
127Downloading importlib_metadata-7.0.2-py3-none-any.whl (24 kB)
128Downloading keyring-24.3.1-py3-none-any.whl (38 kB)
129Downloading mypy_extensions-1.0.0-py3-none-any.whl (4.7 kB)
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132Downloading pathspec-0.12.1-py3-none-any.whl (31 kB)
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138Downloading requests_toolbelt-1.0.0-py2.py3-none-any.whl (54 kB)
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143Downloading urllib3-2.2.1-py3-none-any.whl (121 kB)
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145Downloading pyproject_hooks-1.0.0-py3-none-any.whl (9.3 kB)
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148Downloading charset_normalizer-3.3.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (140 kB)
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150Downloading docutils-0.20.1-py3-none-any.whl (572 kB)
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152Downloading idna-3.6-py3-none-any.whl (61 kB)
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156Downloading markdown_it_py-3.0.0-py3-none-any.whl (87 kB)
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158Downloading nh3-0.2.15-cp37-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB)
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160Downloading pygments-2.17.2-py3-none-any.whl (1.2 MB)
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167Downloading mdurl-0.1.2-py3-none-any.whl (10.0 kB)
168Downloading more_itertools-10.2.0-py3-none-any.whl (57 kB)
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170Downloading cffi-1.16.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (464 kB)
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172Downloading pycparser-2.21-py2.py3-none-any.whl (118 kB)
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174Checking if build backend supports build_editable: started
175Checking if build backend supports build_editable: finished with status 'done'
176Building wheels for collected packages: bioflow-insight
177 Building editable for bioflow-insight (pyproject.toml): started
178 Building editable for bioflow-insight (pyproject.toml): finished with status 'done'
179 Created wheel for bioflow-insight: filename=bioflow_insight-0.0.1.dev0-0.editable-py3-none-any.whl size=18049 sha256=ff8de6ef1f4624387e47c34491c92d97731314fcb73dfe925df19b44182c67d3
180 Stored in directory: /tmp/pip-ephem-wheel-cache-i948v21j/wheels/cf/cb/45/43e31344db35fd40c720adfa1a2efcb7e24822b0c26acb7a50
181Successfully built bioflow-insight
182Installing collected packages: nh3, zipp, urllib3, rfc3986, pyproject_hooks, Pygments, pycparser, platformdirs, pkginfo, pathspec, packaging, numpy, networkx, mypy-extensions, more-itertools, mdurl, jeepney, idna, graphviz, docutils, coverage, click, charset-normalizer, certifi, requests, readme-renderer, markdown-it-py, jaraco.classes, importlib-metadata, cffi, build, black, bioflow-insight, rich, requests-toolbelt, cryptography, SecretStorage, keyring, twine
183Successfully installed Pygments-2.17.2 SecretStorage-3.3.3 bioflow-insight-0.0.1.dev0 black-23.12.1 build-1.1.1 certifi-2024.2.2 cffi-1.16.0 charset-normalizer-3.3.2 click-8.1.7 coverage-7.4.3 cryptography-42.0.5 docutils-0.20.1 graphviz-0.20.1 idna-3.6 importlib-metadata-7.0.2 jaraco.classes-3.3.1 jeepney-0.8.0 keyring-24.3.1 markdown-it-py-3.0.0 mdurl-0.1.2 more-itertools-10.2.0 mypy-extensions-1.0.0 networkx-3.2.1 nh3-0.2.15 numpy-1.26.4 packaging-24.0 pathspec-0.12.1 pkginfo-1.10.0 platformdirs-4.2.0 pycparser-2.21 pyproject_hooks-1.0.0 readme-renderer-43.0 requests-2.31.0 requests-toolbelt-1.0.0 rfc3986-2.0.0 rich-13.7.1 twine-5.0.0 urllib3-2.2.1 zipp-3.18.0
184WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
185$ echo "Tag name used ${CI_COMMIT_TAG}"
186Tag name used v0.0.30
187$ if [[ -z "$CI_COMMIT_TAG" ]]; then # collapsed multi-line command
188$ sed -i "s/v0.0.1-dev/$CI_COMMIT_TAG/g" src/__init__.py
189$ python -m build
190* Creating venv isolated environment...
191* Installing packages in isolated environment... (setuptools >= 61.0)
192* Getting build dependencies for sdist...
193running egg_info
194writing bioflow_insight.egg-info/PKG-INFO
195writing dependency_links to bioflow_insight.egg-info/dependency_links.txt
196writing entry points to bioflow_insight.egg-info/entry_points.txt
197writing requirements to bioflow_insight.egg-info/requires.txt
198writing top-level names to bioflow_insight.egg-info/top_level.txt
199reading manifest file 'bioflow_insight.egg-info/SOURCES.txt'
200adding license file 'LICENSE'
201writing manifest file 'bioflow_insight.egg-info/SOURCES.txt'
202* Building sdist...
203running sdist
204running egg_info
205writing bioflow_insight.egg-info/PKG-INFO
206writing dependency_links to bioflow_insight.egg-info/dependency_links.txt
207writing entry points to bioflow_insight.egg-info/entry_points.txt
208writing requirements to bioflow_insight.egg-info/requires.txt
209writing top-level names to bioflow_insight.egg-info/top_level.txt
210reading manifest file 'bioflow_insight.egg-info/SOURCES.txt'
211adding license file 'LICENSE'
212writing manifest file 'bioflow_insight.egg-info/SOURCES.txt'
213running check
214creating bioflow-insight-0.0.30
215creating bioflow-insight-0.0.30/bioflow_insight.egg-info
216creating bioflow-insight-0.0.30/bioflow_insight_cli
217creating bioflow-insight-0.0.30/src
218creating bioflow-insight-0.0.30/tests
219copying files to bioflow-insight-0.0.30...
220copying LICENSE -> bioflow-insight-0.0.30
221copying README.md -> bioflow-insight-0.0.30
222copying pyproject.toml -> bioflow-insight-0.0.30
223copying requirements-dev.txt -> bioflow-insight-0.0.30
224copying requirements.txt -> bioflow-insight-0.0.30
225copying setup.py -> bioflow-insight-0.0.30
226copying bioflow_insight.egg-info/PKG-INFO -> bioflow-insight-0.0.30/bioflow_insight.egg-info
227copying bioflow_insight.egg-info/SOURCES.txt -> bioflow-insight-0.0.30/bioflow_insight.egg-info
228copying bioflow_insight.egg-info/dependency_links.txt -> bioflow-insight-0.0.30/bioflow_insight.egg-info
229copying bioflow_insight.egg-info/entry_points.txt -> bioflow-insight-0.0.30/bioflow_insight.egg-info
230copying bioflow_insight.egg-info/requires.txt -> bioflow-insight-0.0.30/bioflow_insight.egg-info
231copying bioflow_insight.egg-info/top_level.txt -> bioflow-insight-0.0.30/bioflow_insight.egg-info
232copying bioflow_insight_cli/__init__.py -> bioflow-insight-0.0.30/bioflow_insight_cli
233copying bioflow_insight_cli/main.py -> bioflow-insight-0.0.30/bioflow_insight_cli
234copying src/__init__.py -> bioflow-insight-0.0.30/src
235copying src/bioflowinsighterror.py -> bioflow-insight-0.0.30/src
236copying src/call.py -> bioflow-insight-0.0.30/src
237copying src/channel.py -> bioflow-insight-0.0.30/src
238copying src/code_.py -> bioflow-insight-0.0.30/src
239copying src/constant.py -> bioflow-insight-0.0.30/src
240copying src/emitted.py -> bioflow-insight-0.0.30/src
241copying src/executor.py -> bioflow-insight-0.0.30/src
242copying src/function.py -> bioflow-insight-0.0.30/src
243copying src/graph.py -> bioflow-insight-0.0.30/src
244copying src/include.py -> bioflow-insight-0.0.30/src
245copying src/main_DSL2.py -> bioflow-insight-0.0.30/src
246copying src/nextflow_building_blocks.py -> bioflow-insight-0.0.30/src
247copying src/nextflow_file.py -> bioflow-insight-0.0.30/src
248copying src/operation.py -> bioflow-insight-0.0.30/src
249copying src/outils.py -> bioflow-insight-0.0.30/src
250copying src/outils_graph.py -> bioflow-insight-0.0.30/src
251copying src/process.py -> bioflow-insight-0.0.30/src
252copying src/ro_crate.py -> bioflow-insight-0.0.30/src
253copying src/subworkflow.py -> bioflow-insight-0.0.30/src
254copying src/workflow.py -> bioflow-insight-0.0.30/src
255copying tests/test_call.py -> bioflow-insight-0.0.30/tests
256copying tests/test_channel.py -> bioflow-insight-0.0.30/tests
257copying tests/test_cli.py -> bioflow-insight-0.0.30/tests
258copying tests/test_code.py -> bioflow-insight-0.0.30/tests
259copying tests/test_emitted.py -> bioflow-insight-0.0.30/tests
260copying tests/test_executor.py -> bioflow-insight-0.0.30/tests
261copying tests/test_function.py -> bioflow-insight-0.0.30/tests
262copying tests/test_graph.py -> bioflow-insight-0.0.30/tests
263copying tests/test_include.py -> bioflow-insight-0.0.30/tests
264copying tests/test_main_DSL2.py -> bioflow-insight-0.0.30/tests
265copying tests/test_nextflow_building_blocks.py -> bioflow-insight-0.0.30/tests
266copying tests/test_nextflow_file.py -> bioflow-insight-0.0.30/tests
267copying tests/test_operation.py -> bioflow-insight-0.0.30/tests
268copying tests/test_outils.py -> bioflow-insight-0.0.30/tests
269copying tests/test_process.py -> bioflow-insight-0.0.30/tests
270copying tests/test_subworkflow.py -> bioflow-insight-0.0.30/tests
271copying bioflow_insight.egg-info/SOURCES.txt -> bioflow-insight-0.0.30/bioflow_insight.egg-info
272Writing bioflow-insight-0.0.30/setup.cfg
273Creating tar archive
274removing 'bioflow-insight-0.0.30' (and everything under it)
275* Building wheel from sdist
276* Creating venv isolated environment...
277* Installing packages in isolated environment... (setuptools >= 61.0)
278* Getting build dependencies for wheel...
279running egg_info
280writing bioflow_insight.egg-info/PKG-INFO
281writing dependency_links to bioflow_insight.egg-info/dependency_links.txt
282writing entry points to bioflow_insight.egg-info/entry_points.txt
283writing requirements to bioflow_insight.egg-info/requires.txt
284writing top-level names to bioflow_insight.egg-info/top_level.txt
285reading manifest file 'bioflow_insight.egg-info/SOURCES.txt'
286adding license file 'LICENSE'
287writing manifest file 'bioflow_insight.egg-info/SOURCES.txt'
288* Installing packages in isolated environment... (wheel)
289* Building wheel...
290running bdist_wheel
291running build
292running build_py
293creating build
294creating build/lib
295creating build/lib/src
296copying src/ro_crate.py -> build/lib/src
297copying src/operation.py -> build/lib/src
298copying src/bioflowinsighterror.py -> build/lib/src
299copying src/outils_graph.py -> build/lib/src
300copying src/workflow.py -> build/lib/src
301copying src/nextflow_building_blocks.py -> build/lib/src
302copying src/emitted.py -> build/lib/src
303copying src/outils.py -> build/lib/src
304copying src/call.py -> build/lib/src
305copying src/executor.py -> build/lib/src
306copying src/graph.py -> build/lib/src
307copying src/process.py -> build/lib/src
308copying src/include.py -> build/lib/src
309copying src/__init__.py -> build/lib/src
310copying src/code_.py -> build/lib/src
311copying src/function.py -> build/lib/src
312copying src/constant.py -> build/lib/src
313copying src/nextflow_file.py -> build/lib/src
314copying src/main_DSL2.py -> build/lib/src
315copying src/channel.py -> build/lib/src
316copying src/subworkflow.py -> build/lib/src
317creating build/lib/bioflow_insight_cli
318copying bioflow_insight_cli/main.py -> build/lib/bioflow_insight_cli
319copying bioflow_insight_cli/__init__.py -> build/lib/bioflow_insight_cli
320running egg_info
321writing bioflow_insight.egg-info/PKG-INFO
322writing dependency_links to bioflow_insight.egg-info/dependency_links.txt
323writing entry points to bioflow_insight.egg-info/entry_points.txt
324writing requirements to bioflow_insight.egg-info/requires.txt
325writing top-level names to bioflow_insight.egg-info/top_level.txt
326reading manifest file 'bioflow_insight.egg-info/SOURCES.txt'
327adding license file 'LICENSE'
328writing manifest file 'bioflow_insight.egg-info/SOURCES.txt'
329installing to build/bdist.linux-x86_64/wheel
330running install
331running install_lib
332creating build/bdist.linux-x86_64
333creating build/bdist.linux-x86_64/wheel
334creating build/bdist.linux-x86_64/wheel/src
335copying build/lib/src/ro_crate.py -> build/bdist.linux-x86_64/wheel/src
336copying build/lib/src/operation.py -> build/bdist.linux-x86_64/wheel/src
337copying build/lib/src/bioflowinsighterror.py -> build/bdist.linux-x86_64/wheel/src
338copying build/lib/src/outils_graph.py -> build/bdist.linux-x86_64/wheel/src
339copying build/lib/src/workflow.py -> build/bdist.linux-x86_64/wheel/src
340copying build/lib/src/nextflow_building_blocks.py -> build/bdist.linux-x86_64/wheel/src
341copying build/lib/src/emitted.py -> build/bdist.linux-x86_64/wheel/src
342copying build/lib/src/outils.py -> build/bdist.linux-x86_64/wheel/src
343copying build/lib/src/call.py -> build/bdist.linux-x86_64/wheel/src
344copying build/lib/src/executor.py -> build/bdist.linux-x86_64/wheel/src
345copying build/lib/src/graph.py -> build/bdist.linux-x86_64/wheel/src
346copying build/lib/src/process.py -> build/bdist.linux-x86_64/wheel/src
347copying build/lib/src/include.py -> build/bdist.linux-x86_64/wheel/src
348copying build/lib/src/__init__.py -> build/bdist.linux-x86_64/wheel/src
349copying build/lib/src/code_.py -> build/bdist.linux-x86_64/wheel/src
350copying build/lib/src/function.py -> build/bdist.linux-x86_64/wheel/src
351copying build/lib/src/constant.py -> build/bdist.linux-x86_64/wheel/src
352copying build/lib/src/nextflow_file.py -> build/bdist.linux-x86_64/wheel/src
353copying build/lib/src/main_DSL2.py -> build/bdist.linux-x86_64/wheel/src
354copying build/lib/src/channel.py -> build/bdist.linux-x86_64/wheel/src
355copying build/lib/src/subworkflow.py -> build/bdist.linux-x86_64/wheel/src
356creating build/bdist.linux-x86_64/wheel/bioflow_insight_cli
357copying build/lib/bioflow_insight_cli/main.py -> build/bdist.linux-x86_64/wheel/bioflow_insight_cli
358copying build/lib/bioflow_insight_cli/__init__.py -> build/bdist.linux-x86_64/wheel/bioflow_insight_cli
359running install_egg_info
360Copying bioflow_insight.egg-info to build/bdist.linux-x86_64/wheel/bioflow_insight-0.0.30-py3.11.egg-info
361running install_scripts
362creating build/bdist.linux-x86_64/wheel/bioflow_insight-0.0.30.dist-info/WHEEL
363creating '/builds/sharefair/bioflow-insight/dist/.tmp-v27j8ajt/bioflow_insight-0.0.30-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
364adding 'bioflow_insight_cli/__init__.py'
365adding 'bioflow_insight_cli/main.py'
366adding 'src/__init__.py'
367adding 'src/bioflowinsighterror.py'
368adding 'src/call.py'
369adding 'src/channel.py'
370adding 'src/code_.py'
371adding 'src/constant.py'
372adding 'src/emitted.py'
373adding 'src/executor.py'
374adding 'src/function.py'
375adding 'src/graph.py'
376adding 'src/include.py'
377adding 'src/main_DSL2.py'
378adding 'src/nextflow_building_blocks.py'
379adding 'src/nextflow_file.py'
380adding 'src/operation.py'
381adding 'src/outils.py'
382adding 'src/outils_graph.py'
383adding 'src/process.py'
384adding 'src/ro_crate.py'
385adding 'src/subworkflow.py'
386adding 'src/workflow.py'
387adding 'bioflow_insight-0.0.30.dist-info/LICENSE'
388adding 'bioflow_insight-0.0.30.dist-info/METADATA'
389adding 'bioflow_insight-0.0.30.dist-info/WHEEL'
390adding 'bioflow_insight-0.0.30.dist-info/entry_points.txt'
391adding 'bioflow_insight-0.0.30.dist-info/top_level.txt'
392adding 'bioflow_insight-0.0.30.dist-info/RECORD'
393removing build/bdist.linux-x86_64/wheel
394Successfully built bioflow-insight-0.0.30.tar.gz and bioflow_insight-0.0.30-py3-none-any.whl
395$ python -m twine upload --verbose --repository-url ${REPO_URL} dist/*
396Uploading distributions to
397https://gitlab.pasteur.fr/api/v4/projects/bbrancot%2Fpengflow-server/packages/py
398pi
399INFO dist/bioflow_insight-0.0.30-py3-none-any.whl (72.7 KB)
400INFO dist/bioflow-insight-0.0.30.tar.gz (66.3 KB)
401INFO username set by command options
402INFO password set by command options
403INFO username: gitlab+deploy-token-358
404INFO password: <hidden>
405Uploading bioflow_insight-0.0.30-py3-none-any.whl
406 0% ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0.0/88.8 kB • --:-- • ?
407 0% ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0.0/88.8 kB • --:-- • ?
408100% ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 88.8/88.8 kB • 00:00 • 6.5 MB/s
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410100% ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 88.8/88.8 kB • 00:00 • 6.5 MB/s
411INFO Response from
412 https://gitlab.pasteur.fr/api/v4/projects/bbrancot%2Fpengflow-server/pa
413 ckages/pypi:
414 201 Created
415INFO {"message":"201 Created"}
416Uploading bioflow-insight-0.0.30.tar.gz
417100% ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 82.2/82.2 kB • 00:00 • 25.3 MB/s
418100% ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 82.2/82.2 kB • 00:00 • 25.3 MB/s
419100% ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 82.2/82.2 kB • 00:00 • 25.3 MB/s
420INFO Response from
421 https://gitlab.pasteur.fr/api/v4/projects/bbrancot%2Fpengflow-server/pa
422 ckages/pypi:
423 201 Created
424INFO {"message":"201 Created"}
425 Cleaning up project directory and file based variables 00:00
426Job succeeded