Integrate feedback

Makefile

 FIGURES = action_t1 arbre boumerang_t7 cathète_t9 dictionaries europe_t16 gelocus_t18 last_page_top_left_t1 sanjo_t29
 SNIPPETS = $(wildcard snippets/*.md)
+FILTERS = pandoc-fignos
 FILE_NAME = ICHLL_Brenon
-DEPEDENCIES = $(FIGURES:%=ressources/%.png) $(SNIPPETS:%.md=%.png)
+DEPEDENCIES = $(FIGURES:%=ressources/%.png) $(SNIPPETS:%.md=%.png) biblio.bib
 
 all: $(FILE_NAME).pdf
 
@@ -9,7 +10,7 @@ ICHLL_Brenon.pdf: $(DEPEDENCIES)
 ICHLL_Brenon.docx: $(DEPEDENCIES)
 
 %.pdf: %.md
-	LANG=fr_FR.UTF-8 pandoc $< -o $@
+	LANG=fr_FR.UTF-8 pandoc $< $(FILTERS:%=--filter %) --bibliography=biblio.bib --csl=apa.csl --citeproc -o $@
 
 %.png: %.pdf
 	pdftocairo -png -singlefile -r 400 $^ $(basename $@)
@@ -18,5 +19,5 @@ ICHLL_Brenon.docx: $(DEPEDENCIES)
 	dot -Tpng $< -o $@
 
 %.docx: %.md
-	LANG=fr_FR.UTF-8 pandoc $< --to docx --number-sections -o $@
+	LANG=fr_FR.UTF-8 pandoc $< --to docx --number-sections $(FILTERS:%=--filter %) --bibliography=biblio.bib --csl=apa.csl --citeproc -o $@
 

biblio.bib

+@inproceedings{bohbot2018,
+	TITLE = {{Presenting the N{\'e}nufar Project: a Diachronic Digital Edition of the Petit Larousse Illustr{\'e}}},
+	AUTHOR = {Bohbot, Herv{\'e} and Frontini, Francesca and Luxardo, Giancarlo and Khemakhem, Mohamed and Romary, Laurent},
+	URL = {https://hal.archives-ouvertes.fr/hal-01728328},
+	BOOKTITLE = {{GLOBALEX 2018 - Globalex workshop at LREC2018}},
+	ADDRESS = {Miyazaki, Japan},
+	PAGES = {1-6},
+	YEAR = {2018},
+	MONTH = May,
+	KEYWORDS = {Dictionaries ; Petit Larousse ; TEI},
+	PDF = {https://hal.archives-ouvertes.fr/hal-01728328/file/presenting-nenufar-project%20%282%29.pdf},
+	HAL_ID = {hal-01728328},
+	HAL_VERSION = {v1},
+}
+
+@article{jacquet-pfau2015,
+	AUTHOR = {Jacquet-Pfau, C.},
+	JOURNAL = {{\'E}la. {\'E}tudes de linguistique appliqu{\'e}e},
+	PAGES = {85-100},
+	TITLE = {{\'E}laboration et destin{\'e}e d'une encyclop{\'e}die la fin du XIXe si{\`e}cle : les trente-et-un volumes de \textit{La Grande Encyclop{\'e}die}, Inventaire raisonn{\'e} des sciences, des lettres et des arts par une Soci{\'e}t{\'e} de savants et de gens de lett},
+	VOLUME = {177},
+	YEAR = {2015},
+	URL = {https://doi.org/10.3917/ela.177.0085},
+}
+
+@article{roe2016,
+	AUTHOR={Roe, Glenn and Gladstone, Clovis and Morrissey, Robert},   
+	TITLE={Discourses and Disciplines in the Enlightenment: Topic Modeling the French Encyclopédie},      
+	JOURNAL={Frontiers in Digital Humanities},      
+	VOLUME={2},      
+	YEAR={2016},      
+	URL={https://www.frontiersin.org/article/10.3389/fdigh.2015.00008},       
+		DOI={10.3389/fdigh.2015.00008},      
+	ISSN={2297-2668},   
+	ABSTRACT={This article describes the use of latent Dirichlet allocation (LDA), or topic modeling, to explore the discursive makeup of the eighteenth century Encyclopédie of Denis Diderot and Jean le Rond d’Alembert (1751–1772). Expanding upon previous work modeling the Encyclopédie’s ontology, or classification scheme, we examine the abstractions used by its editors to visualize the various “systems” of knowledge that the work proposes, considered here as heuristic tools for navigating the complex information space of the Encyclopédie. Using these earlier experiments with supervised machine-learning models as a point of reference, we introduce the notion of topic modeling as a “discourse analysis tool” for Enlightenment studies. In so doing, we draw upon the tradition of post-structuralist French discourse analysis, one of the first fields to embrace computational approaches to discursive text analysis. Our particular use of LDA is thus aimed primarily at uncovering interdisciplinary “discourses” in the Encyclopédie that run alongside, under, above, and through the original classifications. By mapping these discourses and discursive practices, we can begin to move beyond the organizational (and physical) limitations of the print edition, suggesting several possible avenues of future research. These experiments thus attest once again to the enduring relevance of the Encyclopédie as an exemplary Enlightenment text. Its rich dialogical structure, whether studied using traditional methods of close reading or through the algorithmic processes described in this article, is perhaps only now coming fully to light thanks to recent developments in digital resources and methods.}
+}
+
+@inproceedings{vigier2019,
+	TITLE = {{GeoDISCO: Encyclopedic Geographical Discourse in France from the
+		Enlightenment to Wikipedia}},
+	AUTHOR = {Vigier, Denis and Moncla, Ludovic and Joliveau, Thierry and
+		McDonough, Katherine and Brenon, Alice},
+	URL = {https://hal.archives-ouvertes.fr/hal-02474835},
+	BOOKTITLE = {{GIR'19, 13th International Workshop on Geographic
+		Information Retrieval}},
+	ADDRESS = {Lyon, France},
+	YEAR = {2019},
+	MONTH = Nov,
+	HAL_ID = {hal-02474835},
+	HAL_VERSION = {v1},
+}
+
+@article{williams2017,
+	TITLE = {{MAPPING A DICTIONARY Using Atlas ti and XML to analyse a late
+		XVII th century dictionary}},
+	AUTHOR = {Williams, Geoffrey},
+	URL = {https://halshs.archives-ouvertes.fr/halshs-01612601},
+	JOURNAL = {{RiCognizioni}},
+	PUBLISHER = {{Universit{\`a} degli Studi di Torino}},
+	VOLUME = {7},
+	NUMBER = {4},
+	PAGES = {161-180},
+	YEAR = {2017},
+	DOI = {10.13135/2384-8987/2104},
+	KEYWORDS = {CAQDAS ; TEI ; Dictionary ; Atlas it},
+	PDF = {https://halshs.archives-ouvertes.fr/halshs-01612601/file/Itinerari_Williams.pdf},
+	HAL_ID = {halshs-01612601},
+	HAL_VERSION = {v1},
+}
+
+@article{blanchard2002,
+	TITLE = {{Le syst{\`e}me de renvois dans l'Encyclop{\'e}die : Une
+		cartographie des structures de connaissances au XVIIIe si{\`e}cle}},
+	AUTHOR = {Blanchard, G. and Olsen, Mark},
+	URL = {https://hal.archives-ouvertes.fr/hal-03336269},
+	JOURNAL = {{Recherches sur Diderot et sur l'Encyclop{\'e}die}},
+	PUBLISHER = {{Soci{\'e}t{\'e} Diderot}},
+	SERIES = {L'Encyclop{\'e}die en ses nouveaux atours
+		{\'e}lectroniques: vices et vertus du virtuel},
+	NUMBER = {31-32},
+	PAGES = {45},
+	YEAR = {2002},
+	DOI = {10.4000/rde.122},
+	PDF = {https://hal.archives-ouvertes.fr/hal-03336269/file/rde-122.pdf},
+	HAL_ID = {hal-03336269},
+	HAL_VERSION = {v1},
+}
+
+@article{lojkine2013,
+	TITLE = {{`` Et l'auteur anonyme n'est pas un l{\^a}che {\ldots} '' Diderot, l'engagement sans le nom}},
+	AUTHOR = {Lojkine, St{\'e}phane},
+	URL = {https://hal.archives-ouvertes.fr/hal-01081454},
+	JOURNAL = {{Litt{\'e}ratures classiques}},
+	PUBLISHER = {{Soci{\'e}t{\'e} de litt{\'e}ratures classiques (SLC) / diff{\'e}rents {\'e}diteurs}},
+	SERIES = {L'anonymat de l'{\oe}uvre (XVIe-XVIIIe si{\`e}cles)},
+	VOLUME = {2013/1},
+	NUMBER = {80},
+	PAGES = {249-263},
+	YEAR = {2013},
+	KEYWORDS = {Diderot ; Encyclop{\'e}die ; engagement ; anonymat},
+	PDF = {https://hal.archives-ouvertes.fr/hal-01081454/file/Diderot_Anonymat_article.pdf},
+	HAL_ID = {hal-01081454},
+	HAL_VERSION = {v1},
+}
+
+@book{moureau2001,
+	TITLE = {{Le Roman vrai de l’Encyclopédie}},
+	AUTHOR = {Moureau, François},
+	YEAR = {2001},
+	PUBLISHER = {Gallimard},
+	ADDRESS = {Paris},
+	URL = {https://catalogue.bnf.fr/ark:/12148/cb36204966x},
+	PAGES = {124-129},
+}
+
+@inproceedings{heiden2010,
+	TITLE = {{The TXM Platform : Building Open-Source Textual Analysis
+		Software Compatible with the TEI Encoding Scheme}},
+	AUTHOR = {Heiden, Serge},
+	URL = {https://halshs.archives-ouvertes.fr/halshs-00549764},
+	BOOKTITLE = {{24th Pacific Asia Conference on Language, Information
+		and Computation}},
+	ADDRESS = {Sendai, Japan},
+	EDITOR = {R. Otoguro and K. Yoshimoto and K. Ishikawa and H.
+		Umemoto and \& Y. Harada},
+	PUBLISHER = {{Institute for Digital Enhancement of Cognitive
+		Development, Waseda University}},
+	VOLUME = {2},
+	NUMBER = {3},
+	PAGES = {389‑398},
+	YEAR = {2010},
+	MONTH = Nov,
+	KEYWORDS = {textometry ; open-source ; search
+		engine ; statistical analysis ; xml-tei
+			corpora},
+	PDF = {https://halshs.archives-ouvertes.fr/halshs-00549764/file/paclic24_sheiden.pdf},
+	HAL_ID = {halshs-00549764},
+	HAL_VERSION = {v1},
+}
+
+@article{dijkstra59,
+	AUTHOR = "Edsger. W. Dijkstra",
+	TITLE = "A note on two problems in connexion with graphs.",
+	YEAR = "1959",
+	JOURNAL = "Numerische Mathematik",
+	VOLUME = 1,
+	PAGES = {269--271},
+	URL = "http://gdzdoc.sub.uni-goettingen.de/sub/digbib/loader?did=D196313",
+	filesize = {256 KB},
+}

feedback.txt

+The specificities of encoding encyclopedias: towards a new standard?
+
+Spelling
+oConsistently use British English spelling.
+
+Title
+oDo not capitalize important words in title, except for proper names or when it is generally required.
+oProvide academic affiliation under the name of author(s).
+oAvoid e-mail address here.
+oDelete topic and keywords, as they are not required at this stage.
+
+General remarks
+oConsistently call your work ‘this chapter’.
+oNumber sections with one digit (1., 2., etc.), and subsections with two digits (1.1, 1.2, etc.). Do not use sub-sub sections (2.1.1, 2.1.2, etc.). Do not use sub-sub-sub sections (2.1.1.1, 2.1.1.2, etc.).
+?Use bold face for sections and subsections. Do not indent.
+oRevise section numbering to avoid empty sub-sections, such as 2.1.
+oDo not use bulleted lists. Write a paragraph instead.
+oUse 1cm indentation for the first line in all paragraphs except the first line of the (sub)section.
+!Revise the text. Avoid gaps and repetitions like “to future other scientific projects”.
+
+Abstract
+oThe abstract must include the aim of the research, a brief description of the method and an overview of the conclusions.
+oAvoid references in abstract.
+oAvoid abstract notes. Include full name of projects and cite them in the Reference section if necessary.
+
+Body
+oExplain how your aims are relevant for and contribute to the topic of the first part of the book: Lexical databases and language processing in digital historical lexicography.
+oExplain clearly in what respect your method departs from previous approaches and improves them.
+oIt would be of help that a brief introduction to each section gave an overview of the contents of the following sub-sections.
+oNumber figures. Refer to them in text as Figure 1, Figure 2, etc. Describe briefly the figures by explicitly referring to the number of the figure in question.
+oExtract must be considered figures.
+oAttributes like [cid:image001.png@01D86623.7C6238D0] must be considered figures.
+oUse figure captions consistently.
+
+Format
+-Avoid double blank spaces and revise punctuation.
+-Avoid double blank lines between paragraphs.
+?Do not place notes under the tables. Use footnotes.
+oJustify the text both on the left and the right.
+
+References
+oDo not present references as bulleted paragraphs.
+oCheck the reference list.
+oSort the reference list alphabetically, by author’s surname.
+
+oIf the research has been funded through a grant, insert an Acknowledgement section before the references.

manifest.scm

@@ -5,5 +5,7 @@
              (gnu packages pdf)
              (gnu packages tex))
 
-(packages->manifest
-  (list gnu-make graphviz pandoc poppler texlive))
+(let
+  ((pandoc-fignos (load "pandoc-fignos.scm")))
+  (packages->manifest
+    (list gnu-make graphviz pandoc poppler texlive pandoc-fignos)))

pandoc-fignos.scm

+(use-modules ((gnu packages python-xyz) #:select (python-psutil))
+             ((gnu packages textutils) #:select (python-pandocfilters))
+             (guix build-system python)
+             ((guix download) #:select (url-fetch))
+             ((guix licenses) #:select (gpl3))
+             (guix packages))
+
+(let
+  ((python-pandoc-xnos (load "pandoc-xnos.scm")))
+  (package
+    (name "python-pandoc-fignos")
+    (version "2.4.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (pypi-uri "pandoc-fignos" version))
+        (sha256
+          (base32 "0jc8glwkhwxi4qc3jh1ssgvrw2jhf9gxv470kwp42948wkmfsn3h"))))
+    (build-system python-build-system)
+    (propagated-inputs (list python-pandoc-xnos))
+    (home-page "https://github.com/tomduck/pandoc-fignos")
+    (synopsis "Figure number filter for pandoc")
+    (description "Figure number filter for pandoc")
+    (license gpl3)))

pandoc-xnos.scm

+(use-modules ((gnu packages python-xyz) #:select (python-psutil python-tox))
+             ((gnu packages textutils) #:select (python-pandocfilters))
+             (guix build-system python)
+             ((guix download) #:select (url-fetch))
+             ((guix licenses) #:select (gpl3))
+             (guix packages))
+
+(package
+  (name "python-pandoc-xnos")
+  (version "2.5.0")
+  (source
+    (origin
+      (method url-fetch)
+      (uri (pypi-uri "pandoc-xnos" version))
+      (sha256
+        (base32 "1bjhwbfz67fm8ckvhhadi7y82cnlv2mnarfwfg2wwklyi667663w"))))
+  (build-system python-build-system)
+  ;(native-inputs (list pandoc python-tox))
+  (arguments
+	`(#:tests? #f
+	  #:phases
+	  (modify-phases %standard-phases
+					 (replace 'check
+							  (lambda* (#:key tests? #:allow-other-keys)
+									   (if tests?
+										 (begin
+										   (invoke "ls")
+										   (invoke "pwd")
+										   (invoke "./test/test.py"))))))))
+  (propagated-inputs (list python-pandocfilters python-psutil))
+  (home-page "https://github.com/tomduck/pandoc-xnos")
+  (synopsis "Library code for the pandoc-xnos filter suite.")
+  (description "Library code for the pandoc-xnos filter suite.")
+  (license gpl3))

snippets/gelocus.md

@@ -4,7 +4,7 @@ header-includes:
 	\usepackage{graphicx}
 	\usepackage[left=0cm,top=0cm,right=0cm,nohead,nofoot]{geometry}
 	\geometry{
-        paperwidth=9.1cm,
+        paperwidth=9.2cm,
         paperheight=1.8cm,
         margin=0cm
 	}
@@ -12,7 +12,7 @@ header-includes:
 
 ```xml
 <p>
-	(V. <ref target="boeuf-0">Boeuf</ref> et
-	<ref target="chevrotain-0">Chevrotain</ref>).
+	(V. <ref target="#boeuf-0">Boeuf</ref> et
+	<ref target="#chevrotain-0">Chevrotain</ref>).
 </p>
 ```