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Commit 4b2bf25b authored by Schneider Leo's avatar Schneider Leo
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datasets

parent 85e4a949
Branches RelectureBK2
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......@@ -275,15 +275,12 @@ def add_length(dataframe):
dataframe['length']=dataframe['seq'].map(fonc)
df = pd.read_csv('output/out_common_ISA_ISA_eval_2.csv')
df = pd.read_csv('output/out_common_ISA_augmented_10_eval.csv')
add_length(df)
df['rt pred'] = 0
for seq, gr in df.groupby('seq') :
df.loc[df['seq']==seq,'rt pred']=gr['true rt'].mean()
# df['abs_error'] = np.abs(df['rt pred']-df['true rt'])
# histo_abs_error(df, display=False, save=True, path='fig/custom model res/histo_ISA_ISA_eval.png')
scatter_rt(df, display=False, save=True, path='fig/custom model res/RT_pred_ISA_ISA_best_possible.png', color=True)
# histo_length_by_error(df, bins=10, display=False, save=True, path='fig/custom model res/histo_length_ISA_ISA_eval.png')
df['abs_error'] = np.abs(df['rt pred']-df['true rt'])
histo_abs_error(df, display=False, save=True, path='fig/custom model res/histo_SA_augmented_10_eval.png')
scatter_rt(df, display=False, save=True, path='fig/custom model res/RT_pred_SA_augmented_10_eval.png', color=True)
histo_length_by_error(df, bins=10, display=False, save=True, path='fig/custom model res/histo_length_SA_augmented_10_eval.png')
#
# df = pd.read_csv('output/out_common_ISA_augmented_3_eval.csv')
# add_length(df)
......@@ -308,10 +305,10 @@ scatter_rt(df, display=False, save=True, path='fig/custom model res/RT_pred_ISA_
## Compare error variation between run
## Prosit column changes affect some peptides more than others (but consistently)
df_1 = pd.read_csv('output/out_common_ISA_prosit_eval.csv')
df_2 = pd.read_csv('output/out_common_ISA_prosit_eval_2.csv')
df = select_best_data(df_1, df_2, 7)
df.to_pickle('database/data_prosit_threshold_7.pkl')
# df_1 = pd.read_csv('output/out_common_ISA_prosit_eval.csv')
# df_2 = pd.read_csv('output/out_common_ISA_prosit_eval_2.csv')
#
# df = select_best_data(df_1, df_2, 7)
# df.to_pickle('database/data_prosit_threshold_7.pkl')
# compare_error(df_1,df_2,save=True,path='fig/custom model res/ISA_prosit_error_variation.png')
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